snpMAP/config.json at main · MirkoDeVita98/snpMAP · GitHub

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{
    "classification": "binary",
    "use_polyphen": "True",
    "retrain": "False",
    "input":{
        "data_dir": "data",
        "dependencies_dir": "dependencies",
        "case_path": "/home/anej/repos/studies/CBM/P2/data/case_processed_v2.vcf",
        "clinvar_path": "/home/anej/repos/studies/CBM/P2/train_data/clinvar.vcf"
    },
    "output":{
        "cache_dir": "cache",
        "results_dir": "results",
        "classification_dir": "classification"
    },
    "SeattleSeq":{
        "java_classpath": "./:/home/anej/repos/studies/CBM/P2/dependencies/seattle138/httpunit-1.7.jar:/home/anej/repos/studies/CBM/P2/dependencies/seattle138/js-1.6R5.jar:/home/anej/repos/studies/CBM/P2/dependencies/seattle138/nekohtml-0.9.5.jar:/home/anej/repos/studies/CBM/P2/dependencies/seattle138/xercesImpl-2.6.1.jar:/home/anej/repos/studies/CBM/P2/dependencies/seattle138/"
    }
}