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environment_ONT_2023.yml
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name: MobiDL-ONT-2023
channels:
- bioconda/label/main
- conda-forge
- anaconda
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _tflow_select=2.3.0=mkl
- abseil-cpp=20210324.2=h9c3ff4c_0
- absl-py=2.0.0=pyhd8ed1ab_0
- aiohttp=3.8.5=py39h5eee18b_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- amply=0.1.6=pyhd8ed1ab_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=4.0.3=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- biopython=1.81=py39h72bdee0_0
- blinker=1.6.3=pyhd8ed1ab_0
- blosc=1.21.5=h0f2a231_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py39h3d6467e_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.20.1=hd590300_0
- c-blosc2=2.10.5=hb4ffafa_0
- ca-certificates=2023.7.22=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.1=pyhd8ed1ab_0
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.14.4=py39he88106c_0
- charset-normalizer=3.3.0=pyhd8ed1ab_0
- clair3=1.0.4=py39hf5e1c6e_2
- click=8.1.7=unix_pyh707e725_0
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.8=ha2443b9_0
- coin-or-utils=2.11.9=hee58242_0
- coincbc=2.10.10=0_metapackage
- coloredlogs=15.0.1=pyhd8ed1ab_3
- colormath=3.0.0=py_2
- contourpy=1.1.1=py39h7633fee_1
- cromwell=0.40=1
- cryptography=38.0.4=py39hd97740a_0
- cuda-version=11.8=h70ddcb2_2
- cudatoolkit=11.8.0=h4ba93d1_12
- cudnn=8.8.0.121=h838ba91_3
- cycler=0.12.1=pyhd8ed1ab_0
- docutils=0.20.1=py39hf3d152e_2
- expat=2.5.0=hcb278e6_1
- fastqc=0.12.1=hdfd78af_0
- findutils=4.6.0=h166bdaf_1001
- flatbuffers=23.5.26=h59595ed_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonttools=4.43.1=py39hd1e30aa_0
- freetype=2.12.1=h267a509_2
- frozenlist=1.4.0=py39hd1e30aa_1
- future=0.18.3=pyhd8ed1ab_0
- gast=0.4.0=pyh9f0ad1d_0
- gatk4=4.3.0.0=py36hdfd78af_0
- gdbm=1.18=h0a1914f_2
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h0b41bf4_3
- google-auth=2.23.3=pyhca7485f_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- google-pasta=0.2.0=pyh8c360ce_0
- grpc-cpp=1.43.2=h9e046d8_3
- grpcio=1.43.0=py39hff7568b_0
- h5py=3.9.0=nompi_py39h4dfffb9_100
- hdf5=1.14.0=nompi_h5231ba7_103
- htslib=1.17=h6bc39ce_1
- humanfriendly=10.0=pyhd8ed1ab_6
- humanize=4.8.0=pyhd8ed1ab_0
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.8.0=pyha770c72_0
- importlib-resources=6.1.0=pyhd8ed1ab_0
- importlib_resources=6.1.0=pyhd8ed1ab_0
- isa-l=2.30.0=hd590300_6
- jinja2=3.1.2=pyhd8ed1ab_1
- jpeg=9e=h0b41bf4_3
- k8=0.2.5=hdcf5f25_4
- keras=2.8.0=pyhd8ed1ab_0
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py39h7633fee_1
- krb5=1.20.1=hf9c8cef_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.40=h41732ed_0
- ldc=1.28.1=hcf88599_0
- lerc=4.0.0=h27087fc_0
- libaec=1.1.2=h59595ed_1
- libblas=3.9.0=19_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=19_linux64_openblas
- libcurl=7.88.1=h91b91d3_2
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=13.2.0=h807b86a_2
- libgfortran-ng=13.2.0=h69a702a_2
- libgfortran5=13.2.0=ha4646dd_2
- libgomp=13.2.0=h807b86a_2
- liblapack=3.9.0=19_linux64_openblas
- liblapacke=3.9.0=19_linux64_openblas
- libllvm12=12.0.1=hf817b99_2
- libnghttp2=1.52.0=ha637b67_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.24=pthreads_h413a1c8_0
- libpng=1.6.39=h753d276_0
- libprotobuf=3.19.6=h3eb15da_0
- libsqlite=3.43.2=h2797004_0
- libssh2=1.10.0=h37d81fd_2
- libstdcxx-ng=13.2.0=h7e041cc_2
- libtiff=4.4.0=h0e0dad5_3
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.13=h7f98852_1004
- libzlib=1.2.13=hd590300_5
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=h516909a_1000
- lzstring=1.0.4=py_1001
- markdown=3.5=pyhd8ed1ab_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.3=py39hd1e30aa_1
- matplotlib-base=3.8.0=py39he9076e7_2
- mdurl=0.1.0=pyhd8ed1ab_0
- minimap2=2.26=he4a0461_2
- multidict=6.0.4=py39hd1e30aa_1
- multiqc=1.17=pyhdfd78af_1
- munkres=1.0.7=py_1
- nccl=2.19.3.1=h6103f9b_0
- ncurses=6.4=hcb278e6_0
- networkx=3.2=pyhd8ed1ab_0
- nomkl=1.0=h5ca1d4c_0
- numexpr=2.8.7=py39hb68c0d3_104
- numpy=1.23.5=py39h3d75532_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- openjdk=8.0.382=hd590300_0
- openjpeg=2.5.0=h7d73246_1
- openssl=1.1.1w=hd590300_0
- opt_einsum=3.3.0=pyhc1e730c_2
- packaging=23.2=pyhd8ed1ab_0
- parallel=20191122=0
- pbzip2=1.1.13=h1fcc475_2
- perl=5.32.1=4_hd590300_perl5
- pigz=2.8=h2797004_0
- pip=23.3=pyhd8ed1ab_0
- protobuf=3.19.6=py39h227be39_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.7.0=py39hf3d152e_1
- py-cpuinfo=9.0.0=pyhd8ed1ab_0
- pyasn1=0.5.0=pyhd8ed1ab_0
- pyasn1-modules=0.3.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pyfaidx=0.7.2.2=pyhdfd78af_0
- pygments=2.16.1=pyhd8ed1ab_0
- pyjwt=2.8.0=pyhd8ed1ab_0
- pyopenssl=23.2.0=pyhd8ed1ab_1
- pyparsing=3.1.1=pyhd8ed1ab_0
- pypy3.6=7.3.2=h45e8706_2
- pysam=0.21.0=py39h9abd093_0
- pysocks=1.7.1=pyha2e5f31_6
- pytables=3.8.0=py39hac3db9e_1
- python=3.9.0=h2a148a8_4_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-flatbuffers=23.5.26=pyhd8ed1ab_0
- python-isal=1.5.0=py39hd1e30aa_0
- python_abi=3.9=2_cp39
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyvcf3=1.0.3=pyhdfd78af_0
- pyyaml=6.0.1=py39hd1e30aa_1
- re2=2022.02.01=h9c3ff4c_0
- readline=8.2=h8228510_1
- requests=2.31.0=pyhd8ed1ab_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rich=13.6.0=pyhd8ed1ab_0
- rich-click=1.7.0=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- sambamba=1.0=h98b6b92_0
- samtools=1.15.1=h6899075_1
- scipy=1.11.3=py39h474f0d3_1
- setuptools=68.2.2=pyhd8ed1ab_0
- simplejson=3.19.2=py39hd1e30aa_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.10=h9fff704_0
- spectra=0.0.11=py_1
- sqlite=3.43.2=h2c6b66d_0
- tensorboard=2.8.0=pyhd8ed1ab_1
- tensorboard-data-server=0.6.1=py39hd97740a_4
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- tensorflow=2.8.0=cuda112py39h01bd6f0_0
- tensorflow-base=2.8.0=cuda112py39h99c2b39_0
- tensorflow-estimator=2.8.0=cuda112py39hd320b7a_0
- termcolor=2.3.0=pyhd8ed1ab_0
- tk=8.6.13=h2797004_0
- typing-extensions=4.8.0=hd8ed1ab_0
- typing_extensions=4.8.0=pyha770c72_0
- tzdata=2023c=h71feb2d_0
- unicodedata2=15.1.0=py39hd1e30aa_0
- urllib3=2.0.6=pyhd8ed1ab_0
- werkzeug=3.0.0=pyhd8ed1ab_0
- whatshap=1.7=py39h1f90b4d_1
- wheel=0.41.2=pyhd8ed1ab_0
- wrapt=1.15.0=py39hd1e30aa_1
- xopen=1.7.0=py39hf3d152e_3
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yarl=1.9.2=py39hd1e30aa_1
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zlib-ng=2.0.7=h0b41bf4_0
- zstandard=0.21.0=py39h6e5214e_1
- zstd=1.5.5=hfc55251_0
- pip:
- joblib==1.3.2
- nanorepeat==1.7
- pillow==10.1.0
- scikit-learn==1.3.1
- threadpoolctl==3.2.0
prefix: /home/bio/miniconda3/envs/MobiDL-ONT-2023