Adding model editor API

Author: cshenry

modelseedpy/__init__.py

@@ -34,7 +34,7 @@ def _warn_format(message, category, filename, lineno, file=None, line=None):
 
 import modelseedpy
 from modelseedpy.core import (
-    RPCClient,FBAHelper,MSBuilder
+    RPCClient,FBAHelper,MSBuilder,MSEditorAPI
 )
 from modelseedpy.fbapkg import (
     BaseFBAPkg,RevBinPkg,ReactionUsePkg,SimpleThermoPkg,TotalFluxPkg,ElementUptakePkg,BilevelPkg,

modelseedpy/core/__init__.py

@@ -4,4 +4,5 @@
 
 from modelseedpy.core.rpcclient import RPCClient
 from modelseedpy.core.fbahelper import FBAHelper
-from modelseedpy.core.msbuilder import MSBuilder
+from modelseedpy.core.msbuilder import MSBuilder
+from modelseedpy.core.mseditorapi import MSEditorAPI

modelseedpy/core/mseditorapi.py

@@ -0,0 +1,35 @@
+import logging
+
+import re
+import copy
+import cobra
+from optlang.symbolics import Zero, add
+from cobra.core import Gene, Metabolite, Model, Reaction
+from modelseedpy.core import FBAHelper
+from modelseedpy.fbapkg import GapfillingPkg, KBaseMediaPkg
+
+#from modelseedpy.core.msgenome import MSGenome
+
+logger = logging.getLogger(__name__)
+
+class MSEditorAPI:
+    @staticmethod
+    def remove_reactions(model,rxn_id_list = []):
+        
+    @staticmethod    
+    def edit_reaction(model,rxn_id,direction = None,gpr = None,genome = None]):    
+    
+    @staticmethod
+    def edit_biomass_compound(model,biomass_id,cpd_id,new_coef,rescale = 1):
+        
+    @staticmethod
+    def add_custom_reaction(model,rxn_id,MSEquation,gpr = None,genome = None):
+    
+    @staticmethod  
+    def add_ms_reaction(model,rxn_id,compartments,modelseed):
+        
+    @staticmethod  
+    def copy_model_reactions(model,source_model,rxn_id_list = []):
+
+class MSEquation:
+