Adding project index and renaming folder

Author: cshenry

Zahmeeth/TestingAlternativeCarbonSources.ipynb CarbonSources/TestingAlternativeCarbonSources.ipynb

@@ -0,0 +1,75 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "\n",
+    "![ModelSEEDpy](images/ms-logo-horizontal.png)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# ModelSEED Team Projects"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "This folder contains notebooks and data associated with various ModelSEED research projects, presentations, and publications"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Topics"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "* [Threonine biosynthesis](Throenine/Index.ipynb): Improving threonine production\n",
+    "* [Gapfilling](Gapfilling/Index.ipynb): Developing improved gapfilling methods\n",
+    "* [Internship projects](students/Index.ipynb): Various project notebooks created by interns\n",
+    "* [Proteome modeling](MaizeProteomeModeling/Index.ipynb): Notebooks for proteome-driven modeling\n",
+    "* [Self driven lab](SDL-AMR/Index.ipynb): Notebooks to support self driven lab work\n",
+    "* [Community modeling](CommunityModeling/Index.ipynb): Community modeling notebooks\n",
+    "* [Carbon source modeling](CarbonSources/Index.ipynb): Notebooks for scanning carbon sources\n",
+    "* [Minimal genome metabolomics FBA](JCVI/Index.ipynb): Notebooks for minimal genome metabolomics FBA"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
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+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.7.6"
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+}