setup.py

from setuptools import setup, find_packages

setup(
    name='TaxonMatch',
    version='2.0.0',
    author='Michele Leone',
    author_email='micheleleone@outlook.com',
    description='A tool for taxonomic name resolution using NCBI and GBIF and many other biological sources',
    long_description=open('README.md').read(),
    long_description_content_type='text/markdown',
    url='https://github.com/MicheleRoar/TaxonMatch',
    packages=find_packages(),
    include_package_data=True,
    package_data={
        'taxonmatch': ['files/dictionaries/*.pkl', 'files/models/*.pkl'],
    },
    install_requires=[
        "anytree>=2.12.1",
        "ete3>=3.1.3",
        "Levenshtein>=0.24.0",
        "rapidfuzz>=3.6.1",
        "textdistance>=4.6.1",
        "pandas>=2.2.0",
        "numpy>=1.26",
        "requests>=2.31",
        "pyinaturalist>=0.19.0",
        "scikit-learn>=1.4.0",
        "jsonschema>=4.21.1",
        "cattrs>=23.2.3",
        "arrow>=1.3.0",
        "async-lru>=2.0.4",
        "pyrate-limiter>=2.10.0",
        "requests-cache>=1.2.0",
        "requests-ratelimiter>=0.6.0",
        "rich>=13.7.1",
        "typing_extensions>=4.12.0",
        "filelock>=3.15",
        "joblib>=1.3.2",
        "jellyfish==1.0.3",
        "matplotlib>=3.8.0",
        "networkx>=3.2",
        "pyarrow>=18.0.0",
        "pyparsing>=3.1.1",
        "pillow>=10.2.0",
        "scipy>=1.12.0",
        "threadpoolctl>=3.2.0",
        "tqdm>=4.66.1",
        "PyYAML>=6.0.1",
        "packaging>=23.2",
        "attrs>=23.2.0",
        "charset-normalizer>=2.0.4",
        "Babel>=2.14.0",
        "click>=8.1.7",
        "wordcloud>=1.9.3",
        "xgboost>=2.0.3",
        "urllib3>=2.1.0"
    ]
)