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Question: Can I select more than 300 channels as excluded channels? #869

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SakimiNagashima opened this issue Feb 9, 2025 · 2 comments

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@SakimiNagashima
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SakimiNagashima commented Feb 9, 2025

Hello.
I am a master's student majoring in neuroscience in Japan.

I recorded neural activity using Neuropixels1.0 (384 channels, covering a wide range of the brain). I would like to analyze only the deepest 0–50 channels, so in the Kilosort4 GUI, I set channels 50–384 as excluded channels.

However, after spike sorting, when I check the results in Phy, I still detect spikes from channels 50–384.

Could you please let me know if I might have made a mistake in the exclusion settings or if there is another factor I should check?

Thank you for your help.

Best regards.

@SakimiNagashima SakimiNagashima changed the title Question: How can I select more than 200 channels as excluded channels? Question: Can I select more than 200 channels as excluded channels? Feb 9, 2025
@SakimiNagashima SakimiNagashima changed the title Question: Can I select more than 200 channels as excluded channels? Question: Can I select more than 300 channels as excluded channels? Feb 9, 2025
@jacobpennington
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Please start by uploading kilosort4.log from the results directory. A screenshot of the kilosort GUI after loading your data would also be helpful.

@SakimiNagashima
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Thank you for your reply.
I have uploaded the file and the screenshot.
I appreciate your support.

kilosort4.log

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