Fixed bug in landmark-matching/pointmatch.m, added debugging output to compute_z_matches_for_patrick_pipeline.m

Author: adamltaylor

compute_z_matches_for_patrick_pipeline.m

@@ -1,6 +1,16 @@
 function compute_z_matches_for_patrick_pipeline(landmarks_root_path, z_matches_root_path, tile_relative_path, ...
                                                 fluorescence_root_path, other_tile_relative_path)                                        
-                                            
+                                          
+    % Print inputs, useful for debugging:
+    name_from_argument_index = who() ;
+    fprintf('Inputs to %s:\n', mfilename()) ;
+    for argument_index = 1 : length(name_from_argument_index) ,
+        name = name_from_argument_index{argument_index} ;
+        value = eval(name) ;
+        fprintf('%s: %s\n', name, value) ;
+    end
+    fprintf('\n') ;                      
+    
     % Synthesize all the tile folder paths
     central_tile_landmark_folder_path = fullfile(landmarks_root_path, tile_relative_path) ;
     other_tile_landmark_folder_path = fullfile(landmarks_root_path, other_tile_relative_path) ;

landmark-matching/pointmatch.m

@@ -23,6 +23,9 @@ function pointmatch(central_tile_landmark_folder_path, ...
     if ~exist('maximum_landmark_count', 'var') || isempty(maximum_landmark_count) ,
         maximum_landmark_count = 1e4 ;
     end   
+    if ~exist('do_run_in_debug_mode', 'var') || isempty(do_run_in_debug_mode) ,
+        do_run_in_debug_mode = false ;
+    end   
     if do_run_in_debug_mode && isempty(sample_metadata) ,
         error('sample_metadata must be nonempty in debug mode') ;
     end