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Added a couple new Ilastik classiifers for hopefully stitching 2021-10-29 sample
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Diff for: foreground-classifiers/run_ilastik_on_stack.m

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@@ -8,12 +8,18 @@ function run_ilastik_on_stack(output_file_path, input_file_name)
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% fullfile(script_folder_path, 'axon_uint16.ilp') ;
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% ilastik_root_path = '/groups/mousebrainmicro/mousebrainmicro/pipeline-systems/tools/ilastik-1.1.9-Linux' ;
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% The 2021-03-17 classifier
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% % The 2021-03-17 classifier
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% ilastik_project_path = ...
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% fullfile(script_folder_path, 'alt-awesome-foreground-classifier-for-2021-03-17.ilp') ;
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% ilastik_root_path = ...
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% '/groups/mousebrainmicro/mousebrainmicro/pipeline-systems/tools/ilastik-1.3.3-Linux' ;
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% The 2021-10-29 classifier
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ilastik_project_path = ...
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fullfile(script_folder_path, 'alt-awesome-foreground-classifier-for-2021-03-17.ilp') ;
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fullfile(script_folder_path, 'alt-awesome-foreground-classifier-for-2021-10-29.ilp') ;
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ilastik_root_path = ...
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'/groups/mousebrainmicro/mousebrainmicro/pipeline-systems/tools/ilastik-1.3.3-Linux' ;
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% The production classifier is designed to be used with Ilastik 1.1.9,
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% which seems to compress HDF5 output files by default.
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% In all cases, we want the output files to be compressed HDF5.

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