Updated shell script to use Matlab 2023a, which exits and works on upgraded Janelia cluster

Author: adamltaylor

compute_landmarks.sh

@@ -2,4 +2,4 @@
 
 SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )"
 cd "$SCRIPT_DIR"
-/misc/local/matlab-2019a/bin/matlab -batch "modpath; compute_landmarks_for_patrick_pipeline('$1', '$2', '$3')"
+/misc/local/matlab-2023a/bin/matlab -batch "modpath; compute_landmarks_for_patrick_pipeline('$1', '$2', '$3')"

compute_z_matches.sh

@@ -2,4 +2,4 @@
 
 SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )"
 cd "$SCRIPT_DIR"
-/misc/local/matlab-2019a/bin/matlab -batch "modpath; compute_z_matches_for_patrick_pipeline('$1', '$2', '$3', '$4', '$5')"
+/misc/local/matlab-2023a/bin/matlab -batch "modpath; compute_z_matches_for_patrick_pipeline('$1', '$2', '$3', '$4', '$5')"

freezing/template_driver_script.sh

@@ -1,3 +1,3 @@
 cd /groups/mousebrainmicro/mousebrainmicro/scripts/freezing
 out=freeze-2020-12-31.out.txt
-bsub -P mouselight -n 8 -oo $out -eo $out /misc/local/matlab-2019a/bin/matlab -nodisplay -batch "modpath; freeze_2020_12_31"
+bsub -P mouselight -n 8 -oo $out -eo $out /misc/local/matlab-2023a/bin/matlab -nodisplay -batch "modpath; freeze_2020_12_31"