cleaned up raf

Author: ago109

ngclearn/components/neurons/spiking/RAFCell.py

@@ -61,9 +61,9 @@ class RAFCell(JaxComponent):
     The specific pair of differential equations that characterize this cell
     are (for adjusting v and w, given current j, over time):
 
-    | tau_m * dv/dt = -(v - v_rest) + sharpV * exp((v - vT)/sharpV) - R_m * w + R_m * j
-    | tau_w * dw/dt =  -w + (v - v_rest) * a
-    | where w = w + s * (w + b) [in the event of a spike]
+    | tau_m * dv/dt = omega * w + v * b
+    | tau_w * dw/dt = w * b - v * omega + j
+    | where omega is angular frequency (Hz) and b is exponential dampening factor
 
     | --- Cell Input Compartments: ---
     | j - electrical current input (takes in external signals)
@@ -93,13 +93,11 @@ class RAFCell(JaxComponent):
         thr: voltage/membrane threshold (to obtain action potentials in terms
             of binary spikes) (Default: 5 mV)
 
-        v_rest: membrane resting potential (Default: -72 mV)
+        v_reset: membrane reset potential condition (Default: 0 mV)
 
-        b: oscillation dampening factor (Default: -1.)
-
-        v0: initial condition / reset for voltage (Default: -70 mV)
+        w_reset: reset condition for angular driver (Default: 0 mV)
 
-        w0: initial condition / reset for angular driver (Default: 0 mV)
+        b: oscillation dampening factor (Default: -1.)
 
         integration_type: type of integration to use for this cell's dynamics;
             current supported forms include "euler" (Euler/RK-1 integration)
@@ -112,9 +110,9 @@ class RAFCell(JaxComponent):
 
     # Define Functions
     def __init__(self, name, n_units, tau_m=15., resist_m=1., tau_w=400.,
-                 omega=10., thr=5., v_rest=-72.,
-                 v_reset=-75., w_reset=0., b=-1., v0=-70., w0=0.,
+                 omega=10., thr=5., v_reset=0., w_reset=0., b=-1.,
                  integration_type="euler", batch_size=1, **kwargs):
+        #v_rest=-72., v_reset=-75., w_reset=0., thr=5., v0=-70., w0=0.,
         super().__init__(name, **kwargs)
 
         ## Integration properties
@@ -128,12 +126,9 @@ def __init__(self, name, n_units, tau_m=15., resist_m=1., tau_w=400.,
         self.omega = omega ## angular frequency
         self.b = b ## dampening factor
         ## note: the smaller b is, the faster the oscillation dampens to resting state values
-        self.v_rest = v_rest
+        #self.v_rest = v_rest
         self.v_reset = v_reset
         self.w_reset = w_reset
-
-        self.v0 = v0 ## initial membrane potential/voltage condition
-        self.w0 = w0 ## initial w-parameter condition
         self.thr = thr
 
         ## Layer Size Setup
@@ -150,8 +145,12 @@ def __init__(self, name, n_units, tau_m=15., resist_m=1., tau_w=400.,
                                 units="ms") ## time-of-last-spike
 
     @staticmethod
-    def _advance_state(t, dt, tau_m, resist_m, tau_w, thr, omega, b, v_rest,
+    def _advance_state(t, dt, tau_m, resist_m, tau_w, thr, omega, b,
                        v_reset, w_reset, intgFlag, j, v, w, tols):
+        ## center variables before running dynamics
+        v = v - v_reset
+        w = w - w_reset
+        ## continue with centered dynamics
         j_ = j * resist_m
         if intgFlag == 1:  ## RK-2/midpoint
             w_params = (j_, v, tau_w, omega, b)
@@ -165,9 +164,11 @@ def _advance_state(t, dt, tau_m, resist_m, tau_w, thr, omega, b, v_rest,
             _, _v = step_euler(0., v, _dfv, dt, v_params)
         s = _emit_spike(_v, thr)
         ## hyperpolarize/reset/snap variables
-        v = _v * (1. - s) + s * v_reset
-        w = _w * (1. - s) + s * w_reset
-
+        v = _v * (1. - s) + s #* v_reset
+        w = _w * (1. - s) + s #* w_reset
+        ## artificially shift variables back to rest/reset values
+        v = v + v_reset
+        w = w + w_reset
         tols = _update_times(t, s, tols)
         return j, v, w, s, tols
 
@@ -180,11 +181,11 @@ def advance_state(self, j, v, w, s, tols):
         self.tols.set(tols)
 
     @staticmethod
-    def _reset(batch_size, n_units, v0, w0):
+    def _reset(batch_size, n_units, v_reset, w_reset):
         restVals = jnp.zeros((batch_size, n_units))
         j = restVals # None
-        v = restVals + v0
-        w = restVals + w0
+        v = restVals + v_reset
+        w = restVals + w_reset
         s = restVals #+ 0
         tols = restVals #+ 0
         return j, v, w, s, tols