Create the following symbolic links:
RepeatClassifier -> repeatmodeler.sh
RepeatModeler -> repeatmodeler.sh
RepeatUtil.pm -> repeatmodeler.sh
SeedAlignmentCollection.pm -> repeatmodeler.sh
TRFMask -> repeatmodeler.sh
BuildDatabase -> repeatmodeler.sh
LTRPipeline -> repeatmodeler.sh
MultAln.pm -> repeatmodeler.sh
Refiner -> repeatmodeler.sh
NeedlemanWunschGotohAlgorithm.pm -> repeatmodeler.sh
SeedAlignment.pm -> repeatmodeler.sh
SequenceSimilarityMatrix.pm -> repeatmodeler.sh