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Dead links should be removed from all jobs (with a few exceptions) #4405

@DavidHuber-NOAA

Description

@DavidHuber-NOAA

What new functionality do you need?

All jobs that create dead links before program execution that are filled during program execution need to be rewritten as this is an EE2 violation. Instead, the files should be copied back to COM after the program completes execution via cpfs.

There are a few exceptions, including:

This is a follow-on issue to #712.

Acceptance Criteria

  • No job creates dead links before program execution
  • All CI tests pass without a change to values
  • cpfs is used to copy files back to COM

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