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Add final xml files including two zooms for high frequency output over RAPID moorings/latitude
1 parent 382728a commit 41bf026

12 files changed

+213
-13
lines changed

‎cfgs/AGRIF_QCO/eORCA025-RAPID12-RAPID36/1_context_nemo.xml

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@@ -25,13 +25,13 @@
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<!-- Files definition -->
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<file_definition src="file_def_nemo-oce_1d_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_5d_C6.xml"/> <!-- NEMO ocean dynamics -->
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<!-- <file_definition src="file_def_nemo-oce_5d_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_1m_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_1y_C6.xml"/> <!-- NEMO ocean dynamics -->
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<!-- <file_definition src="file_def_nemo-oce_1y_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="./file_def_nemo-ice_5d_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- <file_definition src="./file_def_nemo-ice_5d_C6.xml"/> <!-- NEMO ocean sea ice -->
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<file_definition src="./file_def_nemo-ice_1m_C6.xml"/> <!-- NEMO ocean sea ice -->
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<file_definition src="./file_def_nemo-ice_1y_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- <file_definition src="./file_def_nemo-ice_1y_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- Axis definition -->
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<axis_definition src="./axis_def_nemo.xml"/>

‎cfgs/AGRIF_QCO/eORCA025-RAPID12-RAPID36/2_context_nemo.xml

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@@ -27,11 +27,14 @@
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<file_definition src="file_def_nemo-oce_1d_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_5d_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_1m_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_1y_C6.xml"/> <!-- NEMO ocean dynamics -->
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<!-- <file_definition src="file_def_nemo-oce_1y_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-zoom1.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-zoom2.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="./file_def_nemo-ice_5d_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- <file_definition src="./file_def_nemo-ice_5d_C6.xml"/> <!-- NEMO ocean sea ice -->
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<file_definition src="./file_def_nemo-ice_1m_C6.xml"/> <!-- NEMO ocean sea ice -->
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<file_definition src="./file_def_nemo-ice_1y_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- <file_definition src="./file_def_nemo-ice_1y_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- Axis definition -->
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<axis_definition src="./axis_def_nemo.xml"/>
@@ -41,6 +44,7 @@
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<!-- Grids definition -->
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<grid_definition src="./grid_def_nemo.xml"/>
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<grid_definition src="./grid_def_zoom1.xml"/>
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<grid_definition src="./grid_def_zoom2.xml"/>
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</context>

‎cfgs/AGRIF_QCO/eORCA025-RAPID12-RAPID36/context_nemo.xml

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Original file line numberDiff line numberDiff line change
@@ -25,13 +25,13 @@
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<!-- Files definition -->
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<file_definition src="file_def_nemo-oce_1d_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_5d_C6.xml"/> <!-- NEMO ocean dynamics -->
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<!-- <file_definition src="file_def_nemo-oce_5d_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_1m_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="file_def_nemo-oce_1y_C6.xml"/> <!-- NEMO ocean dynamics -->
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<!-- <file_definition src="file_def_nemo-oce_1y_C6.xml"/> <!-- NEMO ocean dynamics -->
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<file_definition src="./file_def_nemo-ice_5d_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- <file_definition src="./file_def_nemo-ice_5d_C6.xml"/> <!-- NEMO ocean sea ice -->
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<file_definition src="./file_def_nemo-ice_1m_C6.xml"/> <!-- NEMO ocean sea ice -->
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<file_definition src="./file_def_nemo-ice_1y_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- <file_definition src="./file_def_nemo-ice_1y_C6.xml"/> <!-- NEMO ocean sea ice -->
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<!-- Axis definition -->
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<axis_definition src="./axis_def_nemo.xml"/>

‎cfgs/AGRIF_QCO/eORCA025-RAPID12-RAPID36/file_def_nemo-zoom1.xml

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../../SHARED/file_def_nemo-zoom1.xml

‎cfgs/AGRIF_QCO/eORCA025-RAPID12-RAPID36/file_def_nemo-zoom2.xml

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../../SHARED/file_def_nemo-zoom2.xml

‎cfgs/AGRIF_QCO/eORCA025-RAPID12-RAPID36/grid_def_zoom1.xml

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../../SHARED/grid_def_zoom1.xml

‎cfgs/AGRIF_QCO/eORCA025-RAPID12-RAPID36/grid_def_zoom2.xml

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../../SHARED/grid_def_zoom2.xml

‎cfgs/AGRIF_QCO/eORCA025-RAPID12-RAPID36/run_het_nemo3796_96x_46n_a2.slurm

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@@ -23,7 +23,7 @@ module load cray-netcdf-hdf5parallel/4.9.0.1
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# Simulation original starting time step (unchanged for LENGTHxTIME_UNITS)
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ITBEGIN=1
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# Simulation length (in TIME_UNITS)
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LENGTH=47
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LENGTH=48
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# Name of this script (to resubmit)
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SCRIPTNAME=run_het_nemo3796_96x_46n_a2.slurm
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#

‎cfgs/SHARED/file_def_nemo-zoom1.xml

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<?xml version="1.0"?>
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<!--
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============================================================================================================
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= output files definition =
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= Define your own files for ocean dynamics context =
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= put the variables you want... =
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============================================================================================================
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-->
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<file_definition type="multiple_file" name="OUTPUT/@expname@_@freq@" sync_freq="1mo" min_digits="4">
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<file_group id="1d" output_freq="1d" split_freq="1mo" output_level="10" enabled=".TRUE.">
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<file id="file201" type="one_file" name_suffix="_gridT_RAPID1" description="zoom variables gridT_RAPID1">
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<field field_ref="toce_con" grid_ref="gridT3D_RAPID1" name="toce_con" operation="average" freq_op="1d" > @toce_con_e3t / @e3t </field>
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<field field_ref="soce_abs" grid_ref="gridT3D_RAPID1" name="soce_abs" operation="average" freq_op="1d" > @soce_abs_e3t / @e3t </field>
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<field field_ref="e3t" grid_ref="gridT3D_RAPID1" name="e3t" operation="average"/>
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<field field_ref="ssh" grid_ref="gridT2D_RAPID1" name="ssh" operation="average"/>
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<field field_ref="botpres" grid_ref="gridT2D_RAPID1" name="botpres" operation="average"/>
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</file>
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<file id="file202" type="one_file" name_suffix="_gridU_RAPID1" description="zoom variables gridU_RAPID1">
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<field field_ref="uoce" grid_ref="gridU3D_RAPID1" name="uo" operation="average" freq_op="1d" > @uoce_e3u / @e3u </field>
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<field field_ref="e3u" grid_ref="gridU3D_RAPID1" name="e3u" standard_name="cell_thickness" />
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<field field_ref="utau" grid_ref="gridU2D_RAPID1" name="tauuo" standard_name="surface_downward_x_stress" />
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</file>
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<file id="file203" type="one_file" name_suffix="_gridV_RAPID1" description="zoom variables gridV_RAPID1">
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<field field_ref="voce" grid_ref="gridV3D_RAPID1" name="vo" operation="average" freq_op="1d" > @voce_e3v / @e3v </field>
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<field field_ref="e3v" grid_ref="gridV3D_RAPID1" name="e3v" standard_name="cell_thickness" />
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<field field_ref="vtau" grid_ref="gridV2D_RAPID1" name="tauvo" standard_name="surface_downward_y_stress" />
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</file>
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<file id="file204" type="one_file" name_suffix="_gridW_RAPID1" description="zoom variables gridW_RAPID1">
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<field field_ref="woce" grid_ref="gridW3D_RAPID1" name="wo" operation="average" />
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<field field_ref="e3w" grid_ref="gridW3D_RAPID1" name="e3w" standard_name="cell_thickness" />
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<field field_ref="bn2" grid_ref="gridW3D_RAPID1" name="obvfsq" />
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</file>
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</file_group>
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</file_definition>

‎cfgs/SHARED/file_def_nemo-zoom2.xml

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@@ -0,0 +1,39 @@
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<?xml version="1.0"?>
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<!--
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============================================================================================================
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= output files definition =
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= Define your own files for ocean dynamics context =
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= put the variables you want... =
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============================================================================================================
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-->
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<file_definition type="multiple_file" name="OUTPUT/@expname@_@freq@" sync_freq="1mo" min_digits="4">
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<file_group id="1d" output_freq="1d" split_freq="1mo" output_level="10" enabled=".TRUE.">
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<file id="file301" type="one_file" name_suffix="_gridT_RAPID2" description="zoom variables gridT_RAPID2">
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<field field_ref="toce_con" grid_ref="gridT3D_RAPID2" name="toce_con" operation="average" freq_op="1d" > @toce_con_e3t / @e3t </field>
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<field field_ref="soce_abs" grid_ref="gridT3D_RAPID2" name="soce_abs" operation="average" freq_op="1d" > @soce_abs_e3t / @e3t </field>
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<field field_ref="e3t" grid_ref="gridT3D_RAPID2" name="e3t" operation="average"/>
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<field field_ref="ssh" grid_ref="gridT2D_RAPID2" name="ssh" operation="average"/>
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<field field_ref="botpres" grid_ref="gridT2D_RAPID2" name="botpres" operation="average"/>
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</file>
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<file id="file302" type="one_file" name_suffix="_gridU_RAPID2" description="zoom variables gridU_RAPID2">
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<field field_ref="uoce" grid_ref="gridU3D_RAPID2" name="uo" operation="average" freq_op="1d" > @uoce_e3u / @e3u </field>
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<field field_ref="e3u" grid_ref="gridU3D_RAPID2" name="e3u" standard_name="cell_thickness" />
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<field field_ref="utau" grid_ref="gridU2D_RAPID2" name="tauuo" standard_name="surface_downward_x_stress" />
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</file>
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<file id="file303" type="one_file" name_suffix="_gridV_RAPID2" description="zoom variables gridV_RAPID2">
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<field field_ref="voce" grid_ref="gridV3D_RAPID2" name="vo" operation="average" freq_op="1d" > @voce_e3v / @e3v </field>
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<field field_ref="e3v" grid_ref="gridV3D_RAPID2" name="e3v" standard_name="cell_thickness" />
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<field field_ref="vtau" grid_ref="gridV2D_RAPID2" name="tauvo" standard_name="surface_downward_y_stress" />
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</file>
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<file id="file304" type="one_file" name_suffix="_gridW_RAPID2" description="zoom variables gridW_RAPID2">
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<field field_ref="woce" grid_ref="gridW3D_RAPID2" name="wo" operation="average" />
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<field field_ref="e3w" grid_ref="gridW3D_RAPID2" name="e3w" standard_name="cell_thickness" />
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<field field_ref="bn2" grid_ref="gridW3D_RAPID2" name="obvfsq" />
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</file>
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</file_group>
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</file_definition>

‎cfgs/SHARED/grid_def_zoom1.xml

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<?xml version="1.0"?>
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<!--
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============================================================================================================
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= grid definition = = DO NOT CHANGE =
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============================================================================================================
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-->
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<grid_definition>
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<!-- T -->
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<grid id="gridT3D_RAPID1">
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<domain domain_ref="grid_T">
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<zoom_domain ni="2424" ibegin="652" nj="62" jbegin="353"/>
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</domain>
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<axis axis_ref="deptht" />
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</grid>
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<grid id="gridT2D_RAPID1">
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<domain domain_ref="grid_T">
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<zoom_domain ni="2424" ibegin="652" nj="62" jbegin="353"/>
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</domain>
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</grid>
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<!-- U -->
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<grid id="gridU3D_RAPID1">
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<domain domain_ref="grid_U">
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<zoom_domain ni="2424" ibegin="652" nj="62" jbegin="353"/>
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</domain>
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<axis axis_ref="deptht" />
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</grid>
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<grid id="gridU2D_RAPID1">
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<domain domain_ref="grid_U">
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<zoom_domain ni="2424" ibegin="652" nj="62" jbegin="353"/>
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</domain>
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</grid>
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<!-- V -->
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<grid id="gridV3D_RAPID1">
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<domain domain_ref="grid_V">
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<zoom_domain ni="2424" ibegin="652" nj="62" jbegin="353"/>
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</domain>
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<axis axis_ref="deptht" />
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</grid>
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<grid id="gridV2D_RAPID1">
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<domain domain_ref="grid_V">
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<zoom_domain ni="2424" ibegin="652" nj="62" jbegin="353"/>
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</domain>
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</grid>
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<!-- W -->
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<grid id="gridW3D_RAPID1">
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<domain domain_ref="grid_W">
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<zoom_domain ni="2424" ibegin="652" nj="62" jbegin="353"/>
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</domain>
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<axis axis_ref="deptht" />
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</grid>
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<grid id="gridW2D_RAPID1">
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<domain domain_ref="grid_W">
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<zoom_domain ni="2424" ibegin="652" nj="62" jbegin="353"/>
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</domain>
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</grid>
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</grid_definition>

‎cfgs/SHARED/grid_def_zoom2.xml

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<?xml version="1.0"?>
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<!--
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============================================================================================================
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= grid definition = = DO NOT CHANGE =
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============================================================================================================
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-->
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<grid_definition>
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<!-- T -->
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<grid id="gridT3D_RAPID2">
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<domain domain_ref="grid_T">
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<zoom_domain ni="1346" ibegin="1672" nj="59" jbegin="246"/>
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</domain>
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<axis axis_ref="deptht" />
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</grid>
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<grid id="gridT2D_RAPID2">
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<domain domain_ref="grid_T">
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<zoom_domain ni="1346" ibegin="1672" nj="59" jbegin="246"/>
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</domain>
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</grid>
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<!-- U -->
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<grid id="gridU3D_RAPID2">
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<domain domain_ref="grid_U">
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<zoom_domain ni="1346" ibegin="1672" nj="59" jbegin="246"/>
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</domain>
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<axis axis_ref="deptht" />
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</grid>
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<grid id="gridU2D_RAPID2">
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<domain domain_ref="grid_U">
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<zoom_domain ni="1346" ibegin="1672" nj="59" jbegin="246"/>
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</domain>
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</grid>
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<!-- V -->
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<grid id="gridV3D_RAPID2">
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<domain domain_ref="grid_V">
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<zoom_domain ni="1346" ibegin="1672" nj="59" jbegin="246"/>
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</domain>
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<axis axis_ref="deptht" />
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</grid>
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<grid id="gridV2D_RAPID2">
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<domain domain_ref="grid_V">
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<zoom_domain ni="1346" ibegin="1672" nj="59" jbegin="246"/>
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</domain>
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</grid>
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<!-- W -->
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<grid id="gridW3D_RAPID2">
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<domain domain_ref="grid_W">
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<zoom_domain ni="1346" ibegin="1672" nj="59" jbegin="246"/>
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</domain>
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<axis axis_ref="deptht" />
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</grid>
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<grid id="gridW2D_RAPID2">
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<domain domain_ref="grid_W">
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<zoom_domain ni="1346" ibegin="1672" nj="59" jbegin="246"/>
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</domain>
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</grid>
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</grid_definition>

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