[io] uncomment warning for non SNP entries

tijyojwad · tijyojwad · commit 376d7caa471e · 2020-06-08T18:06:23.000-04:00
diff --git a/variantworks/io/vcfio.py b/variantworks/io/vcfio.py
@@ -164,7 +164,7 @@ def _parse_vcf(self, vcf_file, bam, labels, is_fp=False):
                         record, vcf_file)
                 )
             if not record.is_snp:
-                # warnings.warn("%s is filtered - not an SNP record" % record)
+                warnings.warn("%s is filtered - not an SNP record" % record)
                 continue
             if len(record.ALT) > 1:
                 warnings.warn(

Original file line number	Diff line number	Diff line change
`@@ -164,7 +164,7 @@ def _parse_vcf(self, vcf_file, bam, labels, is_fp=False):`
`164`	`164`	`record, vcf_file)`
`165`	`165`	`)`
`166`	`166`	`if not record.is_snp:`
`167`		`- # warnings.warn("%s is filtered - not an SNP record" % record)`
	`167`	`+ warnings.warn("%s is filtered - not an SNP record" % record)`
`168`	`168`	`continue`
`169`	`169`	`if len(record.ALT) > 1:`
`170`	`170`	`warnings.warn(`