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[Encoders] Handle exception samtools mpileup output when searching for insertions in SummaryEncoder #156

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ohadmo opened this issue Dec 8, 2020 · 0 comments
Open

[Encoders] Handle exception samtools mpileup output when searching for insertions in SummaryEncoder #156

ohadmo opened this issue Dec 8, 2020 · 0 comments
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ohadmo commented Dec 8, 2020

When searching for the inserted positions in the pileup strings read from the .pileup file (which was generated by samtools), an exception occurs in the find_insertions() methods when a few pileup reads do not have a digit after the '+' sign, e.g.:
TTTtttTt^+t

Was tested on m54328_180927_224427
@ohadmo ohadmo added the bug Something isn't working label Dec 8, 2020
@ohadmo ohadmo self-assigned this Dec 8, 2020
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