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{
"R": {
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{
"Name": "BioCsoft",
"URL": "https://bioconductor.org/packages/3.20/bioc"
},
{
"Name": "BioCann",
"URL": "https://bioconductor.org/packages/3.20/data/annotation"
},
{
"Name": "BioCexp",
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},
{
"Name": "BioCworkflows",
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},
{
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},
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}
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"Title": "A data package",
"Date": "2009-07-22",
"Author": "Xiaochun Li",
"Description": "Data of T- and B-cell Acute Lymphocytic Leukemia from the Ritz Laboratory at the DFCI (includes Apr 2004 versions)",
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"NeedsCompilation": "no"
},
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"Title": "Manipulation of SQLite-based annotations in Bioconductor",
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"URL": "https://bioconductor.org/packages/AnnotationDbi",
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"URL": "https://github.com/Bioconductor/AnnotationFilter",
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],
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"Encoding": "UTF-8",
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"git_last_commit": "1204cb5",
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"Author": "Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]",
"Maintainer": "Bioconductor Package Maintainer <[email protected]>"
},
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"Package": "BH",
"Version": "1.87.0-1",
"Source": "Repository",
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"Title": "Boost C++ Header Files",
"Date": "2024-12-17",
"Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"John W.\", \"Emerson\", role = \"aut\"), person(\"Michael J.\", \"Kane\", role = \"aut\", comment = c(ORCID = \"0000-0003-1899-6662\")))",
"Description": "Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN packages. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. As of release 1.84.0-0, the following Boost libraries are included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast' 'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config' 'container' 'date_time' 'detail' 'dynamic_bitset' 'exception' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'lambda2' 'math' 'move' 'mp11' 'mpl' 'multiprecision' 'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'process' 'propery_tree' 'qvm' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort' 'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'url' 'utility' 'uuid'.",
"License": "BSL-1.0",
"URL": "https://github.com/eddelbuettel/bh, https://dirk.eddelbuettel.com/code/bh.html",
"BugReports": "https://github.com/eddelbuettel/bh/issues",
"NeedsCompilation": "no",
"Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), John W. Emerson [aut], Michael J. Kane [aut] (<https://orcid.org/0000-0003-1899-6662>)",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Repository": "CRAN",
"Encoding": "UTF-8"
},
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"Package": "Biobase",
"Version": "2.66.0",
"Source": "Bioconductor",
"Title": "Biobase: Base functions for Bioconductor",
"Description": "Functions that are needed by many other packages or which replace R functions.",
"biocViews": "Infrastructure",
"URL": "https://bioconductor.org/packages/Biobase",
"BugReports": "https://github.com/Bioconductor/Biobase/issues",
"License": "Artistic-2.0",
"Authors@R": "c( person(\"R.\", \"Gentleman\", role=\"aut\"), person(\"V.\", \"Carey\", role = \"aut\"), person(\"M.\", \"Morgan\", role=\"aut\"), person(\"S.\", \"Falcon\", role=\"aut\"), person(\"Haleema\", \"Khan\", role = \"ctb\", comment = \"'esApply' and 'BiobaseDevelopment' vignette translation from Sweave to Rmarkdown / HTML\" ), person(\"Bioconductor Package Maintainer\", role = \"cre\", email = \"[email protected]\" ))",
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"limma"
],
"Depends": [
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"BiocGenerics (>= 0.27.1)",
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],
"Imports": [
"methods"
],
"VignetteBuilder": "knitr",
"LazyLoad": "yes",
"Collate": "tools.R strings.R environment.R vignettes.R packages.R AllGenerics.R VersionsClass.R VersionedClasses.R methods-VersionsNull.R methods-VersionedClass.R DataClasses.R methods-aggregator.R methods-container.R methods-MIAxE.R methods-MIAME.R methods-AssayData.R methods-AnnotatedDataFrame.R methods-eSet.R methods-ExpressionSet.R methods-MultiSet.R methods-SnpSet.R methods-NChannelSet.R anyMissing.R rowOp-methods.R updateObjectTo.R methods-ScalarObject.R zzz.R",
"git_url": "https://git.bioconductor.org/packages/Biobase",
"git_branch": "RELEASE_3_20",
"git_last_commit": "2cd604f",
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"Repository": "Bioconductor 3.20",
"NeedsCompilation": "yes",
"Author": "R. Gentleman [aut], V. Carey [aut], M. Morgan [aut], S. Falcon [aut], Haleema Khan [ctb] ('esApply' and 'BiobaseDevelopment' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]",
"Maintainer": "Bioconductor Package Maintainer <[email protected]>"
},
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"Source": "Bioconductor",
"Title": "General utility functions for developing Bioconductor packages",
"Authors@R": "c( person(\"Marcel\", \"Ramos\", , \"[email protected]\", c(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\") ), person(\"Martin\", \"Morgan\", , \"[email protected]\", \"ctb\" ), person(\"Hervé\", \"Pagès\", , \"[email protected]\", \"ctb\") )",
"Description": "The package provides utility functions related to package development. These include functions that replace slots, and selectors for show methods. It aims to coalesce the various helper functions often re-used throughout the Bioconductor ecosystem.",
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],
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],
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],
"License": "Artistic-2.0",
"Encoding": "UTF-8",
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"Roxygen": "list(markdown = TRUE)",
"RoxygenNote": "7.3.2",
"VignetteBuilder": "knitr",
"Date": "2024-08-22",
"git_url": "https://git.bioconductor.org/packages/BiocBaseUtils",
"git_branch": "RELEASE_3_20",
"git_last_commit": "ad54d83",
"git_last_commit_date": "2024-10-29",
"Repository": "Bioconductor 3.20",
"NeedsCompilation": "no",
"Author": "Marcel Ramos [aut, cre] (<https://orcid.org/0000-0002-3242-0582>), Martin Morgan [ctb], Hervé Pagès [ctb]",
"Maintainer": "Marcel Ramos <[email protected]>"
},
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"Package": "BiocGenerics",
"Version": "0.52.0",
"Source": "Bioconductor",
"Title": "S4 generic functions used in Bioconductor",
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"biocViews": "Infrastructure",
"URL": "https://bioconductor.org/packages/BiocGenerics",
"BugReports": "https://github.com/Bioconductor/BiocGenerics/issues",
"License": "Artistic-2.0",
"Encoding": "UTF-8",
"Author": "The Bioconductor Dev Team",
"Maintainer": "Hervé Pagès <[email protected]>",
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"methods",
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],
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],
"Suggests": [
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"GenomicRanges",
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"affy",
"affyPLM",
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],
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