diff --git a/src/edu/umich/andykong/ptmshepherd/iterativelocalization/MatchedIonDistribution.java b/src/edu/umich/andykong/ptmshepherd/iterativelocalization/MatchedIonDistribution.java index 6804771..5efa54a 100644 --- a/src/edu/umich/andykong/ptmshepherd/iterativelocalization/MatchedIonDistribution.java +++ b/src/edu/umich/andykong/ptmshepherd/iterativelocalization/MatchedIonDistribution.java @@ -223,7 +223,6 @@ public void calculateIonPosterior() { nDecoys = this.projDecoyCounts[i]; double q = (double) (nDecoys + 1) / (double) (nDecoys + nTargets + 2); this.qVals[i] = q; - System.out.println(this.qVals[i]); } // Make array monotonic /** @@ -245,7 +244,6 @@ public void calculateIonPosterior() { nDecoys = this.projDecoyCounts[i]; double q = (double) (nDecoys + 1) / (double) (nDecoys + nTargets + 2); this.qVals[i] = q; - System.out.println(this.qVals[i]); } // Make array monotonic /** @@ -298,7 +296,6 @@ public void calculateNegativePredictiveValue() { // todo see if adding 1 here he this.ionPosterior = new double[((int) (100.0 * this.binMult + 1))]; for (int i = 0; i < this.ionPosterior.length; i++) { this.ionPosterior[i] = (double) ((this.pdf[i]) / (double) (this.pdf[i] + this.pdfDecoy[i])); - System.out.println(this.ionPosterior[i]); } //this.negPredictiveValue = Math.max(this.negPredictiveValue, 0.01); }