Merge pull request #417 from OHDSI/develop

v2.1 release

Author: katy-sadowski

.Rbuildignore

@@ -7,3 +7,5 @@ compare_versions
 deploy.sh
 docs/*
 extras/*
+^doc$
+^Meta$

.gitignore

@@ -37,3 +37,5 @@ docs/Gemfile
 docs/Gemfile.lock
 sql
 vignettes/*.log
+/doc/
+/Meta/

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: DataQualityDashboard
 Type: Package
 Title: Execute and View Data Quality Checks on OMOP CDM Database
-Version: 2.0.0
-Date: 2022-12-08
+Version: 2.1.0
+Date: 2023-02-13
 Authors@R: c(
   person("Clair", "Blacketer", , "[email protected]", role = c("aut", "cre")),
   person("Ajit", "Londhe", role = c("aut")),
@@ -28,7 +28,9 @@ Imports:
     rJava,
     SqlRender (>= 1.6.0),
     plyr,
-    stringr
+    stringr,
+    rlang,
+    tidyselect
 Suggests:
     testthat,
     knitr,

NAMESPACE

@@ -9,9 +9,14 @@ export(writeJsonResultsToTable)
 import(DatabaseConnector)
 import(magrittr)
 importFrom(magrittr,"%>%")
+importFrom(rlang,.data)
 importFrom(stats,na.omit)
 importFrom(stats,setNames)
 importFrom(stringr,regex)
 importFrom(stringr,str_detect)
+importFrom(tidyselect,all_of)
+importFrom(utils,install.packages)
+importFrom(utils,menu)
 importFrom(utils,packageVersion)
 importFrom(utils,read.csv)
+importFrom(utils,write.table)

NEWS.md

@@ -1,3 +1,18 @@
+DataQualityDashboard 2.1.0
+===========================
+This release includes:
+
+### Bugfixes
+
+  - cdmDatatype check, which checks that values in integer columns are integers, updated so that float values will now fail the check
+  - Quotes removed from `offset` column name in v5.4 thresholds file so that this column is skipped by DQD in all cases (use of reserved word causes failures in some SQL dialects)
+  - Broken images fixed in addNewCheck vignette
+
+### HADES requirements
+
+  - All snakecase variables updated to camelcase
+  - Global variable binding R Check note resolved
+
 DataQualityDashboard 2.0.0
 ===========================
 This release includes:

R/constants.R

@@ -1,4 +1,4 @@
-# Copyright 2022 Observational Health Data Sciences and Informatics
+# Copyright 2023 Observational Health Data Sciences and Informatics
 #
 # This file is part of DataQualityDashboard
 #
@@ -14,4 +14,4 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-ACCEPTED_CDM_REGEX <- "^5.[2-4]$"
+acceptedCdmRegex <- "^5.[2-4]$"