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README.md

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[![fastp ci](https://github.com/OpenGene/fastp/actions/workflows/ci.yml/badge.svg?branch=master)](https://github.com/OpenGene/fastp/actions/workflows/ci.yml)
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# fastp
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A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
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A tool designed to provide ultrafast all-in-one preprocessing and quality control for FastQ data.
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This tool is designed for processing short reads (i.e. Illumina NovaSeq, MGI), if you are looking for tools to process long reads (i.e. Nanopore, PacBio, Cyclone), please use [fastplong](https://github.com/OpenGene/fastplong)
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Citation: Shifu Chen. 2023. Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp. iMeta 2: e107. https://doi.org/10.1002/imt2.107
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- [fastp](#fastp)
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- [features](#features)
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- [simple usage](#simple-usage)
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- [examples of report](#examples-of-report)

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