We had been using OpenMendel with Julia version 0.6.0, but now we want to use the 'Missings' module which requires Julia version 1.0.0 or higher, but when I try to install MendelBase using Julia version 1.0.0, it fails because the GLM module does not work, choking on this line:
using Base.LinAlg.LAPACK: potrf!, potrs!
Any ideas how to fix this?
Thanks,
-- Dan --
_ _ ()_ | Documentation: https://docs.julialang.org
() | () () |
_ _ | | __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ ` | |
| | || | | | (| | | Version 1.0.0 (2018-08-08)
/ |_'|||_'_| | Official https://julialang.org/ release
|__/ |
julia> using MendelBase
[ Info: Precompiling MendelBase [ad4ee748-342c-5e0b-a1f2-4993d4221618]
ERROR: LoadError: UndefVarError: LinAlg not defined
Stacktrace:
[1] include at ./boot.jl:317 [inlined]
[2] include_relative(::Module, ::String) at ./loading.jl:1038
[3] include(::Module, ::String) at ./sysimg.jl:29
[4] top-level scope at none:2
[5] eval at ./boot.jl:319 [inlined]
[6] eval(::Expr) at ./client.jl:389
[7] top-level scope at ./none:3
in expression starting at /home/weeks/.julia/dev/GLM/src/GLM.jl:5
ERROR: LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to /home/weeks/.julia/compiled/v1.0/GLM/6OREG.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
[8] include at ./boot.jl:317 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1038
[10] include(::Module, ::String) at ./sysimg.jl:29
[11] top-level scope at none:2
[12] eval at ./boot.jl:319 [inlined]
[13] eval(::Expr) at ./client.jl:389
[14] top-level scope at ./none:3
in expression starting at /home/weeks/.julia/dev/MendelBase/src/MendelBase.jl:11
ERROR: Failed to precompile MendelBase [ad4ee748-342c-5e0b-a1f2-4993d4221618] to /home/weeks/.julia/compiled/v1.0/MendelBase/DpgEd.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
julia>
We had been using OpenMendel with Julia version 0.6.0, but now we want to use the 'Missings' module which requires Julia version 1.0.0 or higher, but when I try to install MendelBase using Julia version 1.0.0, it fails because the GLM module does not work, choking on this line:
Any ideas how to fix this?
Thanks,
-- Dan --
_ _ ()_ | Documentation: https://docs.julialang.org
() | () () |
_ _ | | __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ ` | |
| | || | | | (| | | Version 1.0.0 (2018-08-08)
/ |_'|||_'_| | Official https://julialang.org/ release
|__/ |
julia> using MendelBase
[ Info: Precompiling MendelBase [ad4ee748-342c-5e0b-a1f2-4993d4221618]
ERROR: LoadError: UndefVarError: LinAlg not defined
Stacktrace:
[1] include at ./boot.jl:317 [inlined]
[2] include_relative(::Module, ::String) at ./loading.jl:1038
[3] include(::Module, ::String) at ./sysimg.jl:29
[4] top-level scope at none:2
[5] eval at ./boot.jl:319 [inlined]
[6] eval(::Expr) at ./client.jl:389
[7] top-level scope at ./none:3
in expression starting at /home/weeks/.julia/dev/GLM/src/GLM.jl:5
ERROR: LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to /home/weeks/.julia/compiled/v1.0/GLM/6OREG.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
[8] include at ./boot.jl:317 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1038
[10] include(::Module, ::String) at ./sysimg.jl:29
[11] top-level scope at none:2
[12] eval at ./boot.jl:319 [inlined]
[13] eval(::Expr) at ./client.jl:389
[14] top-level scope at ./none:3
in expression starting at /home/weeks/.julia/dev/MendelBase/src/MendelBase.jl:11
ERROR: Failed to precompile MendelBase [ad4ee748-342c-5e0b-a1f2-4993d4221618] to /home/weeks/.julia/compiled/v1.0/MendelBase/DpgEd.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
julia>