From 07aafb73a48a41c437a7b6d0f4017491d7dabe92 Mon Sep 17 00:00:00 2001
From: "Michael A. Perlin" <mika.perlin@gmail.com>
Date: Sun, 15 Dec 2024 14:21:00 -0500
Subject: [PATCH 1/3] Unroll broadcast face rotations (#110)

* unroll face rotations as well

* fixed regression tests

---------
---
 .../src/pecos/slr/gen_codes/gen_qasm.py       | 28 +++++++++++-----
 ...local_steane_code_program.t_gate_+X_X.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_+X_Y.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_+X_Z.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_+Y_X.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_+Y_Y.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_+Y_Z.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_+Z_X.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_+Z_Y.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_+Z_Z.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-X_X.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-X_Y.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-X_Z.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-Y_X.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-Y_Y.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-Y_Z.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-Z_X.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-Z_Y.qasm | 32 ++++++++++++++++---
 ...local_steane_code_program.t_gate_-Z_Z.qasm | 32 ++++++++++++++++---
 ...os.qeclib.steane.gates_sq.face_rots.F.qasm | 16 ++++++++--
 ....qeclib.steane.gates_sq.face_rots.Fdg.qasm | 16 ++++++++--
 ....preps.t_plus_state.PrepEncodeTPlusFT.qasm | 16 ++++++++--
 ...s.t_plus_state.PrepEncodeTPlusFTRUS_1.qasm | 16 ++++++++--
 ...s.t_plus_state.PrepEncodeTPlusFTRUS_2.qasm | 16 ++++++++--
 ...s.t_plus_state.PrepEncodeTPlusFTRUS_3.qasm | 16 ++++++++--
 25 files changed, 608 insertions(+), 92 deletions(-)

diff --git a/python/quantum-pecos/src/pecos/slr/gen_codes/gen_qasm.py b/python/quantum-pecos/src/pecos/slr/gen_codes/gen_qasm.py
index 69540c93..2d615b75 100644
--- a/python/quantum-pecos/src/pecos/slr/gen_codes/gen_qasm.py
+++ b/python/quantum-pecos/src/pecos/slr/gen_codes/gen_qasm.py
@@ -227,23 +227,35 @@ def process_qgate(self, op):
                     )
 
                 case "F":
-                    op_str = " ".join(
-                        [f"rx(pi/2) {str(q)};\nrz(pi/2) {str(q)};" for q in op.qargs],
+                    op_str = "\n".join(
+                        [
+                            self.qgate_sq_qasm(op, "rx(pi/2)"),
+                            self.qgate_sq_qasm(op, "rz(pi/2)"),
+                        ],
                     )
 
                 case "Fdg":
-                    op_str = " ".join(
-                        [f"ry(-pi/2) {str(q)};\nrz(-pi/2) {str(q)};" for q in op.qargs],
+                    op_str = "\n".join(
+                        [
+                            self.qgate_sq_qasm(op, "ry(-pi/2)"),
+                            self.qgate_sq_qasm(op, "rz(-pi/2)"),
+                        ],
                     )
 
                 case "F4":
-                    op_str = " ".join(
-                        [f"ry(-pi/2) {str(q)};\nrz(pi/2) {str(q)};" for q in op.qargs],
+                    op_str = "\n".join(
+                        [
+                            self.qgate_sq_qasm(op, "ry(-pi/2)"),
+                            self.qgate_sq_qasm(op, "rz(pi/2)"),
+                        ],
                     )
 
                 case "F4dg":
-                    op_str = " ".join(
-                        [f"rx(-pi/2) {str(q)};\nrz(-pi/2) {str(q)};" for q in op.qargs],
+                    op_str = "\n".join(
+                        [
+                            self.qgate_sq_qasm(op, "rx(-pi/2)"),
+                            self.qgate_sq_qasm(op, "rz(-pi/2)"),
+                        ],
                     )
 
                 case "Prep":
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_X.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_X.qasm
index aa7252b4..9f331119 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_X.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_X.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -854,8 +866,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_Y.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_Y.qasm
index 5b8003e8..ebe56c99 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_Y.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_Y.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -856,8 +868,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_Z.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_Z.qasm
index 86e76d51..057a3155 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_Z.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+X_Z.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -846,8 +858,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_X.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_X.qasm
index f482779d..9cf7dee1 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_X.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_X.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -854,8 +866,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_Y.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_Y.qasm
index b5118ac0..76c0b634 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_Y.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_Y.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -856,8 +868,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_Z.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_Z.qasm
index c03fae9a..f65d98c8 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_Z.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Y_Z.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -846,8 +858,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_X.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_X.qasm
index ab821420..31a71eab 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_X.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_X.qasm
@@ -333,8 +333,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -847,8 +859,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_Y.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_Y.qasm
index 774f6f56..c99a85a4 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_Y.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_Y.qasm
@@ -333,8 +333,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -849,8 +861,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_Z.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_Z.qasm
index 8d85e992..0bc59800 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_Z.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_+Z_Z.qasm
@@ -333,8 +333,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -839,8 +851,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_X.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_X.qasm
index 67349f5a..77717655 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_X.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_X.qasm
@@ -344,8 +344,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -858,8 +870,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_Y.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_Y.qasm
index c7a4db4e..46c811c3 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_Y.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_Y.qasm
@@ -344,8 +344,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -860,8 +872,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_Z.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_Z.qasm
index 35c1ee7c..986618a0 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_Z.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-X_Z.qasm
@@ -344,8 +344,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -850,8 +862,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_X.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_X.qasm
index 432eb4d3..95d37e5c 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_X.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_X.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -854,8 +866,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_Y.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_Y.qasm
index eb1bd6eb..318f8c8e 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_Y.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_Y.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -856,8 +868,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_Z.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_Z.qasm
index 2e4fe9ce..5fe83926 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_Z.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Y_Z.qasm
@@ -340,8 +340,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -846,8 +858,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_X.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_X.qasm
index 87ddec86..0785eba5 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_X.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_X.qasm
@@ -336,8 +336,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -850,8 +862,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_Y.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_Y.qasm
index b952af58..17b7533f 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_Y.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_Y.qasm
@@ -336,8 +336,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -852,8 +864,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_Z.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_Z.qasm
index 8e4059fe..3c1ebc27 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_Z.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/local_steane_code_program.t_gate_-Z_Z.qasm
@@ -336,8 +336,20 @@ if(saux_flags == 0) saux_flags = saux_flag_x | saux_flags_z;
 
 saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
 
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[0] = saux_scratch[2];
 // Transversal Logical CX
 barrier sin_d, saux_d;
@@ -842,8 +854,20 @@ if(saux_scratch[2] != 0) saux_flag_x[2] = saux_flag_x[2] ^ saux_last_raw_syn_x[2
 if(saux_scratch[2] != 0) saux_flags = saux_flag_x | saux_flags_z;
 
 if(saux_scratch[2] != 0) saux_scratch[2] = (((saux_scratch[0] | saux_scratch[1]) | saux_flags[0]) | saux_flags[1]) | saux_flags[2];
-rx(-pi/2) saux_d;
-rz(-pi/2) saux_d;
+rx(-pi/2) saux_d[0];
+rx(-pi/2) saux_d[1];
+rx(-pi/2) saux_d[2];
+rx(-pi/2) saux_d[3];
+rx(-pi/2) saux_d[4];
+rx(-pi/2) saux_d[5];
+rx(-pi/2) saux_d[6];
+rz(-pi/2) saux_d[0];
+rz(-pi/2) saux_d[1];
+rz(-pi/2) saux_d[2];
+rz(-pi/2) saux_d[3];
+rz(-pi/2) saux_d[4];
+rz(-pi/2) saux_d[5];
+rz(-pi/2) saux_d[6];
 m_reject[1] = saux_scratch[2];
 
 barrier sin_d[0], sin_d[1], sin_d[2], sin_d[3], sin_d[4], sin_d[5], sin_d[6], sin_a[0];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.gates_sq.face_rots.F.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.gates_sq.face_rots.F.qasm
index 6f17dfd1..f3a47a68 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.gates_sq.face_rots.F.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.gates_sq.face_rots.F.qasm
@@ -1,2 +1,14 @@
-rx(-pi/2) q_test;
-rz(-pi/2) q_test;
+rx(-pi/2) q_test[0];
+rx(-pi/2) q_test[1];
+rx(-pi/2) q_test[2];
+rx(-pi/2) q_test[3];
+rx(-pi/2) q_test[4];
+rx(-pi/2) q_test[5];
+rx(-pi/2) q_test[6];
+rz(-pi/2) q_test[0];
+rz(-pi/2) q_test[1];
+rz(-pi/2) q_test[2];
+rz(-pi/2) q_test[3];
+rz(-pi/2) q_test[4];
+rz(-pi/2) q_test[5];
+rz(-pi/2) q_test[6];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.gates_sq.face_rots.Fdg.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.gates_sq.face_rots.Fdg.qasm
index 6f17dfd1..f3a47a68 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.gates_sq.face_rots.Fdg.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.gates_sq.face_rots.Fdg.qasm
@@ -1,2 +1,14 @@
-rx(-pi/2) q_test;
-rz(-pi/2) q_test;
+rx(-pi/2) q_test[0];
+rx(-pi/2) q_test[1];
+rx(-pi/2) q_test[2];
+rx(-pi/2) q_test[3];
+rx(-pi/2) q_test[4];
+rx(-pi/2) q_test[5];
+rx(-pi/2) q_test[6];
+rz(-pi/2) q_test[0];
+rz(-pi/2) q_test[1];
+rz(-pi/2) q_test[2];
+rz(-pi/2) q_test[3];
+rz(-pi/2) q_test[4];
+rz(-pi/2) q_test[5];
+rz(-pi/2) q_test[6];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFT.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFT.qasm
index 6386786c..d0dbee43 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFT.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFT.qasm
@@ -199,5 +199,17 @@ if(flags_test == 0) flag_x_test[2] = flag_x_test[2] ^ last_raw_syn_x_test[2];
 if(flags_test == 0) flags_test = flag_x_test | flag_z_test;
 
 reject_test[0] = (((out_test[0] | out_test[1]) | flags_test[0]) | flags_test[1]) | flags_test[2];
-rx(-pi/2) q_test;
-rz(-pi/2) q_test;
+rx(-pi/2) q_test[0];
+rx(-pi/2) q_test[1];
+rx(-pi/2) q_test[2];
+rx(-pi/2) q_test[3];
+rx(-pi/2) q_test[4];
+rx(-pi/2) q_test[5];
+rx(-pi/2) q_test[6];
+rz(-pi/2) q_test[0];
+rz(-pi/2) q_test[1];
+rz(-pi/2) q_test[2];
+rz(-pi/2) q_test[3];
+rz(-pi/2) q_test[4];
+rz(-pi/2) q_test[5];
+rz(-pi/2) q_test[6];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_1.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_1.qasm
index aef2de39..eb6b68ee 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_1.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_1.qasm
@@ -200,5 +200,17 @@ if(flags_test == 0) flags_test = flag_x_test | flag_z_test;
 
 reject_test[0] = (((out_test[0] | out_test[1]) | flags_test[0]) | flags_test[1]) | flags_test[2];
 
-rx(-pi/2) q_test;
-rz(-pi/2) q_test;
+rx(-pi/2) q_test[0];
+rx(-pi/2) q_test[1];
+rx(-pi/2) q_test[2];
+rx(-pi/2) q_test[3];
+rx(-pi/2) q_test[4];
+rx(-pi/2) q_test[5];
+rx(-pi/2) q_test[6];
+rz(-pi/2) q_test[0];
+rz(-pi/2) q_test[1];
+rz(-pi/2) q_test[2];
+rz(-pi/2) q_test[3];
+rz(-pi/2) q_test[4];
+rz(-pi/2) q_test[5];
+rz(-pi/2) q_test[6];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_2.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_2.qasm
index c50b2754..e9faee00 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_2.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_2.qasm
@@ -400,5 +400,17 @@ if(reject_test[0] != 0) flag_x_test[2] = flag_x_test[2] ^ last_raw_syn_x_test[2]
 if(reject_test[0] != 0) flags_test = flag_x_test | flag_z_test;
 
 if(reject_test[0] != 0) reject_test[0] = (((out_test[0] | out_test[1]) | flags_test[0]) | flags_test[1]) | flags_test[2];
-rx(-pi/2) q_test;
-rz(-pi/2) q_test;
+rx(-pi/2) q_test[0];
+rx(-pi/2) q_test[1];
+rx(-pi/2) q_test[2];
+rx(-pi/2) q_test[3];
+rx(-pi/2) q_test[4];
+rx(-pi/2) q_test[5];
+rx(-pi/2) q_test[6];
+rz(-pi/2) q_test[0];
+rz(-pi/2) q_test[1];
+rz(-pi/2) q_test[2];
+rz(-pi/2) q_test[3];
+rz(-pi/2) q_test[4];
+rz(-pi/2) q_test[5];
+rz(-pi/2) q_test[6];
diff --git a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_3.qasm b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_3.qasm
index bc240f66..5bb8f082 100644
--- a/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_3.qasm
+++ b/python/tests/pecos/regression/test_qasm/regression_qasm/pecos.qeclib.steane.preps.t_plus_state.PrepEncodeTPlusFTRUS_3.qasm
@@ -601,5 +601,17 @@ if(reject_test[0] != 0) flag_x_test[2] = flag_x_test[2] ^ last_raw_syn_x_test[2]
 if(reject_test[0] != 0) flags_test = flag_x_test | flag_z_test;
 
 if(reject_test[0] != 0) reject_test[0] = (((out_test[0] | out_test[1]) | flags_test[0]) | flags_test[1]) | flags_test[2];
-rx(-pi/2) q_test;
-rz(-pi/2) q_test;
+rx(-pi/2) q_test[0];
+rx(-pi/2) q_test[1];
+rx(-pi/2) q_test[2];
+rx(-pi/2) q_test[3];
+rx(-pi/2) q_test[4];
+rx(-pi/2) q_test[5];
+rx(-pi/2) q_test[6];
+rz(-pi/2) q_test[0];
+rz(-pi/2) q_test[1];
+rz(-pi/2) q_test[2];
+rz(-pi/2) q_test[3];
+rz(-pi/2) q_test[4];
+rz(-pi/2) q_test[5];
+rz(-pi/2) q_test[6];

From 5fa61637125005c3304cc939c7c59aad9fb58c61 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ciar=C3=A1n=20Ryan-Anderson?= <ciaranra@gmail.com>
Date: Mon, 16 Dec 2024 21:07:34 -0700
Subject: [PATCH 2/3] Upgrade to using uv instead of pip (#111)

* Adding uv to Makefile

* update python-release.yml to use uv

* Switch to using uv.lock

* Using uv workspace

* Further makefile simplification (e.g., remove $(VENV_BIN)/)

* Update README and DEVELOPMENT

* update python-test

* Update python-release

* Update .github/workflows/python-release.yml

* Update DEVELOPMENT.md

* Update README.md

* update DEVELOPMENT.md

* Update DEVELOPMENT.md about install uv

* Have only one point of uv install in makefile

* Update flows to use actions to install uv
---------
---
 .github/workflows/python-release.yml  |   79 +-
 .github/workflows/python-test.yml     |   55 +-
 development.md => DEVELOPMENT.md      |   39 +-
 Makefile                              |  114 +-
 README.md                             |    2 +-
 pyproject.toml                        |   26 +
 python/pecos-rslib/pyproject.toml     |    3 +
 python/quantum-pecos/pyproject.toml   |   38 +-
 python/quantum-pecos/requirements.txt |   38 -
 uv.lock                               | 1444 +++++++++++++++++++++++++
 10 files changed, 1605 insertions(+), 233 deletions(-)
 rename development.md => DEVELOPMENT.md (55%)
 create mode 100644 pyproject.toml
 delete mode 100644 python/quantum-pecos/requirements.txt
 create mode 100644 uv.lock

diff --git a/.github/workflows/python-release.yml b/.github/workflows/python-release.yml
index ca3dbcf3..7155f5b0 100644
--- a/.github/workflows/python-release.yml
+++ b/.github/workflows/python-release.yml
@@ -66,13 +66,20 @@ jobs:
         with:
           python-version: ${{ env.PYTHON_VERSION }}
 
+      - name: Install the latest version of uv
+        uses: astral-sh/setup-uv@v4
+        with:
+          enable-cache: true
+          ignore-nothing-to-cache: true
+          cache-dependency-glob: |
+            **/pyproject.toml
+            **/requirements*.txt
+            **/uv.lock
+
       - name: Remove conflicting README.md
         run: |
           if [ -f crates/pecos-python/README.md ]; then
             mv crates/pecos-python/README.md crates/pecos-python/README.md.bak
-            echo "Moved conflicting README.md to README.md.bak"
-          else
-            echo "No conflicting README.md found"
           fi
 
       - name: Build pecos-rslib SDist
@@ -87,15 +94,13 @@ jobs:
         run: |
           if [ -f crates/pecos-python/README.md.bak ]; then
             mv crates/pecos-python/README.md.bak crates/pecos-python/README.md
-            echo "Restored README.md from backup"
-          else
-            echo "No README.md backup found"
           fi
 
-      - name: Test pecos-rslib SDist
+      - name: Install and test pecos-rslib SDist
         run: |
-          pip install --force-reinstall --verbose python/pecos-rslib/dist/*.tar.gz
-          python -c 'import pecos_rslib; print(pecos_rslib.__version__)'
+          uv sync --project .
+          uv pip install --force-reinstall python/pecos-rslib/dist/*.tar.gz
+          uv run python -c 'import pecos_rslib; print(pecos_rslib.__version__)'
 
       - name: Upload pecos-rslib SDist
         uses: actions/upload-artifact@v4
@@ -130,13 +135,15 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
+      - name: Install the latest version of uv
+        uses: astral-sh/setup-uv@v4
+        with:
+          enable-cache: true
+
       - name: Remove conflicting README.md
         run: |
           if [ -f crates/pecos-python/README.md ]; then
             mv crates/pecos-python/README.md crates/pecos-python/README.md.bak
-            echo "Moved conflicting README.md to README.md.bak"
-          else
-            echo "No conflicting README.md found"
           fi
 
       - name: Build wheel
@@ -153,16 +160,14 @@ jobs:
         run: |
           if [ -f crates/pecos-python/README.md.bak ]; then
             mv crates/pecos-python/README.md.bak crates/pecos-python/README.md
-            echo "Restored README.md from backup"
-          else
-            echo "No README.md backup found"
           fi
 
       - name: Test wheel
         if: ${{ !(matrix.architecture == 'x86_64' && matrix.os == 'macos-latest') && matrix.architecture != 'aarch64' }}
         run: |
-          pip install --force-reinstall --verbose python/pecos-rslib/dist/*.whl
-          python -c 'import pecos_rslib; print(pecos_rslib.__version__)'
+          uv sync --project .
+          uv pip install --force-reinstall python/pecos-rslib/dist/*.whl
+          uv run python -c 'import pecos_rslib; print(pecos_rslib.__version__)'
 
       - name: Upload wheel
         uses: actions/upload-artifact@v4
@@ -187,29 +192,33 @@ jobs:
         with:
           python-version: ${{ env.PYTHON_VERSION }}
 
+      - name: Install the latest version of uv
+        uses: astral-sh/setup-uv@v4
+        with:
+          enable-cache: true
+
       - name: Download pecos-rslib wheel
         uses: actions/download-artifact@v4
         with:
           name: wheel-pecos-rslib-ubuntu-latest-x86_64-py${{ env.PYTHON_VERSION }}
           path: ./pecos-rslib-wheel
 
-      - name: Install pecos-rslib
-        run: pip install ./pecos-rslib-wheel/*.whl
-
-      - name: Install build dependencies
+      - name: Setup environment and install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install build
+          uv sync --project .
+          uv pip install ./pecos-rslib-wheel/*.whl
+          uv pip install build
 
       - name: Build quantum-pecos SDist
         run: |
           cd python/quantum-pecos
+          uv pip install --system build
           python -m build --sdist --outdir dist
 
       - name: Test quantum-pecos SDist
         run: |
-          pip install python/quantum-pecos/dist/*.tar.gz
-          python -c 'import pecos; print(pecos.__version__)'
+          uv pip install python/quantum-pecos/dist/*.tar.gz
+          uv run python -c 'import pecos; print(pecos.__version__)'
 
       - name: Upload quantum-pecos SDist
         uses: actions/upload-artifact@v4
@@ -233,24 +242,25 @@ jobs:
         with:
           ref: ${{ inputs.sha || github.sha }}
 
-      - name: Set up Python ${{ matrix.python-version }}
+      - name: Set up Python
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
 
+      - name: Install the latest version of uv
+        uses: astral-sh/setup-uv@v4
+        with:
+          enable-cache: true
+
       - name: Download pecos-rslib wheel
         uses: actions/download-artifact@v4
         with:
           name: wheel-pecos-rslib-ubuntu-latest-x86_64-py${{ matrix.python-version }}
           path: ./pecos-rslib-wheel
 
-      - name: Install pecos-rslib
-        run: pip install ./pecos-rslib-wheel/*.whl
-
-      - name: Install build dependencies
+      - name: Setup environment and install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install build
+          uv pip install --system ./pecos-rslib-wheel/*.whl build
 
       - name: Build quantum-pecos wheel
         run: |
@@ -259,8 +269,9 @@ jobs:
 
       - name: Test quantum-pecos wheel
         run: |
-          pip install python/quantum-pecos/dist/*.whl
-          python -c 'import pecos; print(pecos.__version__)'
+          uv sync  # This will use the workspace config correctly
+          uv pip install python/quantum-pecos/dist/*.whl
+          uv run python -c 'import pecos; print(pecos.__version__)'
 
       - name: Upload quantum-pecos wheel
         uses: actions/upload-artifact@v4
diff --git a/.github/workflows/python-test.yml b/.github/workflows/python-test.yml
index a1eb7ea6..5929196d 100644
--- a/.github/workflows/python-test.yml
+++ b/.github/workflows/python-test.yml
@@ -1,5 +1,4 @@
 name: Python test / linting
-
 on:
   push:
     branches: [ "master", "development" ]
@@ -22,7 +21,6 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-
 env:
   RUSTFLAGS: -C debuginfo=0
   RUST_BACKTRACE: 1
@@ -34,7 +32,6 @@ defaults:
 
 jobs:
   python-test:
-
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
@@ -50,25 +47,10 @@ jobs:
       with:
         python-version: ${{ matrix.python-version }}
 
-    - name: Create and activate virtual environment
-      env:
-        BIN: ${{ matrix.os == 'windows-latest' && 'Scripts' || 'bin' }}
-      run: |
-          python -m venv .venv
-          source .venv/$BIN/activate
-          echo "$GITHUB_WORKSPACE/.venv/$BIN" >> $GITHUB_PATH
-          echo "VIRTUAL_ENV=$GITHUB_WORKSPACE/.venv" >> $GITHUB_ENV
-
-    - name: Install Python dependencies
-      run: |
-        python -m pip install --upgrade pip setuptools
-        pip install maturin pre-commit
-        echo "Temporarily removing pecos-rslib from requirements... because we need to build it"
-        grep -v "pecos-rslib" python/quantum-pecos/requirements.txt > temp_requirements.txt
-        echo "Installing project requirements (excluding pecos-rslib)..."
-        pip install -r temp_requirements.txt
-        echo "Cleaning up temporary files..."
-        rm temp_requirements.txt
+    - name: Install the latest version of uv
+      uses: astral-sh/setup-uv@v4
+      with:
+        enable-cache: true
 
     - name: Set up Rust
       run: rustup show
@@ -78,23 +60,34 @@ jobs:
       with:
           workspaces: python/pecos-rslib
 
-    - name: Install pecos-rslib with maturin develop
+    - name: Generate lockfile and install dependencies
+      run: |
+        uv lock --project .
+        uv sync --project .
+
+    - name: Install pecos-rslib with maturin
       run: |
         cd python/pecos-rslib
-        maturin develop
+        uv run maturin develop --uv
 
-    - name: Install pure Python PECOS
-      run: pip install ./python/quantum-pecos/
+    - name: Install quantum-pecos
+      run: |
+        cd python/quantum-pecos
+        uv pip install -e .
 
     - name: Run pre-commit checks
+      run: uv run pre-commit run --all-files --show-diff-on-failure
+
+    - name: Install test dependencies
       run: |
-        pre-commit run --all-files --show-diff-on-failure
+        cd python/quantum-pecos
+        uv pip install -e .[all,test]  # Install with both all and test extras
+        uv pip install pytest pytest-cov  # Explicitly install test requirements
 
     - name: Run standard tests
       run: |
-        pytest ./python/tests --doctest-modules --junitxml=junit/test-results.xml --cov=com --cov-report=xml --cov-report=html
+        uv run pytest ./python/tests --doctest-modules --junitxml=junit/test-results.xml --cov=com --cov-report=xml --cov-report=html
 
-    - name: Run tests with optional dependencies
+    - name: Run optional dependency tests
       run: |
-        pip install ./python/quantum-pecos/[all]
-        pytest ./python/tests --doctest-modules --junitxml=junit/test-results.xml --cov=com --cov-report=xml --cov-report=html -m optional_dependency
+        uv run pytest ./python/tests --doctest-modules --junitxml=junit/test-results.xml --cov=com --cov-report=xml --cov-report=html -m optional_dependency
diff --git a/development.md b/DEVELOPMENT.md
similarity index 55%
rename from development.md
rename to DEVELOPMENT.md
index e3aa46be..9b60ea36 100644
--- a/development.md
+++ b/DEVELOPMENT.md
@@ -10,38 +10,14 @@ For developers who want to contribute or modify PECOS:
    cd PECOS
    ```
 
-3. Set up the development environment either using the `Makefile` (Note: for Windows to use the `Makefile` you may need to use a shell that has access to Linux commands such as utilizing [git bash](https://gitforwindows.org/)):
-   ```sh
-   make venv
-   ```
-   <details>
-   <summary>or manually set up a Python virtual environment for develop of this project's code.</summary>
-
-   On Linux/Mac:
-
-   ```sh
-   python -m venv .venv
-   source .venv/bin/activate
-   pip install -U pip setuptools
-   pip install -r python/quantum-pecos/requirements.txt
-   make metadeps
-   pre-commit install
-   ```
-
-   On Windows:
+3. [Install `uv` for your system](https://docs.astral.sh/uv/getting-started/installation/).
+   And run the following at the root of the project to create a development environment, which will be stored in `.venv/`:
 
    ```sh
-   python -m venv .venv
-   .\venv\Scripts\activate
-   pip install -U pip setuptools
-   pip install -r python/quantum-pecos/requirements.txt
-   make metadeps
-   pre-commit install
+   uv sync
    ```
-   </details>
-
 
-4. When developing in the development environment, be sure to activate the venv:
+4. You may wish to explicitly activate the environment for development. To do so:
 
     On Linux/Mac:
     ```sh
@@ -50,24 +26,21 @@ For developers who want to contribute or modify PECOS:
 
     On Windows:
     ```sh
-    .\venv\Scripts\activate
+    .\.venv\Scripts\activate
     ```
 
-
 5. Build the project in editable mode
     ```sh
    make build
    ```
    See other build options in the `Makefile`.
 
-
 6. Run all Python and Rust tests:
    ```sh
    make test
    ```
    Note: Make sure you have run a build command before running tests.
 
-
 7. Run linters using pre-commit (after [installing it](https://pre-commit.com/)) to make sure all everything is properly linted/formated
    ```sh
    make lint
@@ -78,4 +51,6 @@ For developers who want to contribute or modify PECOS:
     deactivate
     ```
 
+Before pull requests are merged, they must pass linting and the test.
+
 Note: For the Rust side of the project, you can use `cargo` to run tests, benchmarks, formatting, etc.
diff --git a/Makefile b/Makefile
index 0089fbf5..c482b1db 100644
--- a/Makefile
+++ b/Makefile
@@ -5,90 +5,43 @@ PYTHONPATH := $(shell which python 2>/dev/null || which python3 2>/dev/null)
 
 SHELL=bash
 
-# Get absolute path of venv directory
-BASE_DIR := $(shell realpath .)
-VENV=$(BASE_DIR)/.venv
-ifeq ($(OS),Windows_NT)
-    VENV_BIN := $(VENV)/Scripts
-else
-    VENV_BIN := $(VENV)/bin
-endif
-
-# Define the path to main Python pyproject.toml
-PYPROJECT_PATH := python/quantum-pecos/pyproject.toml
-
-# Virtual environment
-# -------------------
-
-.PHONY: venv
-venv:  ## Build Python virtual environment
-	$(PYTHONPATH) -m venv $(VENV)
-
 # Requirements
 # ------------
-.PHONY: requirements
-requirements: metadeps installreqs  ## Install/refresh Python project requirements including those needed for development
 
 .PHONY: updatereqs
-updatereqs:  ## Auto update and generate requirements.txt
-	@echo "Upgrading pip..."
-	$(VENV_BIN)/python -m pip install --upgrade pip
-	$(VENV_BIN)/pip install -U pip-tools
-	-@rm python/quantum-pecos/requirements.txt
-	@echo "Using version: $(call get_version)"
-	@echo "Temporarily modifying pyproject.toml..."
-	@sed -i.bak '/pecos-rslib==/d' $(PYPROJECT_PATH)
-	$(VENV_BIN)/pip-compile --extra=tests --no-annotate --no-emit-index-url \
-		--output-file=python/quantum-pecos/requirements.txt \
-		--strip-extras $(PYPROJECT_PATH)
-	@echo "Restoring original pyproject.toml..."
-	@mv $(PYPROJECT_PATH).bak $(PYPROJECT_PATH)
-	@echo "Adding pecos-rslib back to requirements.txt..."
-	@echo "pecos-rslib==$(call get_version)" >> python/quantum-pecos/requirements.txt
-	@echo "numpy==1.26.4 ; python_version < \"3.13\"" >> python/quantum-pecos/requirements.txt
+updatereqs:  ## Generate/update lockfiles for both packages
+	@echo "Ensuring uv is installed..."
+	uv self update
+	@echo "Generating lock files..."
+	uv lock
 
 .PHONY: installreqs
-installreqs: upgrade-pip ## Install Python project requirements
-	@echo "Temporarily removing pecos-rslib from requirements..."
-	@grep -v "pecos-rslib" python/quantum-pecos/requirements.txt > temp_requirements.txt
-
-	@echo "Installing project requirements (excluding pecos-rslib)..."
-	$(VENV_BIN)/pip install -r temp_requirements.txt
-
-	@echo "Cleaning up temporary files..."
-	@rm temp_requirements.txt
-
-.PHONY: metadeps
-metadeps: upgrade-pip  ## Install extra dependencies used to develop/build this package
-	$(VENV_BIN)/pip install -U setuptools pip-tools pre-commit maturin
-
-# Function to extract version from pyproject.toml
-define get_version
-$(shell grep -m 1 'version\s*=' $(PYPROJECT_PATH) | sed 's/.*version\s*=\s*"\(.*\)".*/\1/')
-endef
+installreqs: ## Install Python project requirements to root .venv
+	@echo "Installing requirements..."
+	uv sync
 
 # Building development environments
 # ---------------------------------
 .PHONY: build
-build: requirements ## Compile and install for development
-	@unset CONDA_PREFIX && cd python/pecos-rslib/ && $(VENV_BIN)/maturin develop
-	@unset CONDA_PREFIX && cd python/quantum-pecos && $(VENV_BIN)/pip install -e .[all]
+build: installreqs ## Compile and install for development
+	cd python/pecos-rslib/ && uv run maturin develop --uv
+	cd python/quantum-pecos && uv pip install -e .[all]
 
 .PHONY: build-basic
-build-basic: requirements ## Compile and install for development but do not include install extras
-	@unset CONDA_PREFIX && cd python/pecos-rslib/ && $(VENV_BIN)/maturin develop
-	@unset CONDA_PREFIX && cd python/quantum-pecos && $(VENV_BIN)/pip install -e .
+build-basic: installreqs ## Compile and install for development but do not include install extras
+	cd python/pecos-rslib/ && uv run maturin develop --uv
+	cd python/quantum-pecos && uv pip install -e .
 
 .PHONY: build-release
-build-release: requirements ## Build a faster version of binaries
-	@unset CONDA_PREFIX && cd python/pecos-rslib/ && $(VENV_BIN)/maturin develop --release
-	@unset CONDA_PREFIX && cd python/quantum-pecos && $(VENV_BIN)/pip install -e .[all]
+build-release: installreqs ## Build a faster version of binaries
+	cd python/pecos-rslib/ && uv run maturin develop --uv --release
+	cd python/quantum-pecos && uv pip install -e .[all]
 
 .PHONY: build-native
-build-native: requirements ## Build a faster version of binaries with native CPU optimization
-	@unset CONDA_PREFIX && cd python/pecos-rslib/ && RUSTFLAGS='-C target-cpu=native' \
-	&& $(VENV_BIN)/maturin develop --release
-	@unset CONDA_PREFIX && cd python/quantum-pecos && $(VENV_BIN)/pip install -e .[all]
+build-native: installreqs ## Build a faster version of binaries with native CPU optimization
+	cd python/pecos-rslib/ && RUSTFLAGS='-C target-cpu=native' \
+	&& uv run maturin develop --uv --release
+	cd python/quantum-pecos && uv pip install -e .[all]
 
 # Documentation
 # -------------
@@ -114,7 +67,7 @@ fmt: ## Run autoformatting for cargo
 
 .PHONY: lint  ## Run all quality checks / linting / reformatting
 lint: fmt clippy
-	$(VENV_BIN)/pre-commit run --all-files
+	uv run pre-commit run --all-files
 
 # Testing
 # -------
@@ -125,27 +78,27 @@ rstest:  ## Run Rust tests
 
 .PHONY: pytest
 pytest:  ## Run tests on the Python package (not including optional dependencies). ASSUMES: previous build command
-	@cd python/tests/ && $(VENV_BIN)/pytest . -m "not optional_dependency"
+	uv run pytest ./python/tests/ -m "not optional_dependency"
 
 .PHONY: pytest-dep
 pytest-dep: ## Run tests on the Python package only for optional dependencies. ASSUMES: previous build command
-	@cd python/ && $(VENV_BIN)/pytest tests -m optional_dependency
+	uv run pytest ./python/tests/ -m optional_dependency
+
+.PHONY: pytest-all
+pytest-all:  ## Run all tests on the Python package ASSUMES: previous build command
+	uv run pytest ./python/tests/
 
 # .PHONY: pytest-doc
 # pydoctest:  ## Run doctests with pytest. ASSUMES: A build command was ran previously. ASSUMES: previous build command
 # 	# TODO: update and install docs requirements
-# 	@cd python/ && $(VENV_BIN)/pytest docs --doctest-glob=*.rst --doctest-continue-on-failure
+# 	uv run pytest docs --doctest-glob=*.rst --doctest-continue-on-failure
 
 .PHONY: test
-test: rstest pytest pytest-dep ## Run all tests. ASSUMES: previous build command
+test: rstest pytest-all ## Run all tests. ASSUMES: previous build command
 
 # Utility
 # -------
 
-.PHONY: upgrade-pip
-upgrade-pip:
-	$(VENV_BIN)/python -m pip install --upgrade pip
-
 .PHONY: clean
 clean:  ## Clean up caches and build artifacts
 	@rm -rf *.egg-info
@@ -159,6 +112,13 @@ clean:  ## Clean up caches and build artifacts
 	@rm -rf **/junit/
 	@cargo clean
 
+.PHONY: pip-install-uv
+pip-install-uv:  ## Install uv using pip and create a venv. (Recommended to instead follow: https://docs.astral.sh/uv/getting-started/installation/
+	@echo "Installing uv..."
+	$(PYTHONPATH) -m pip install --upgrade uv
+	@echo "Creating venv and installing dependencies..."
+	uv sync
+
 # Help
 # ----
 
diff --git a/README.md b/README.md
index 4bdad387..f4c1ecae 100644
--- a/README.md
+++ b/README.md
@@ -100,7 +100,7 @@ pecos = "0.x.x"  # Replace with the latest version
 ## Development Setup
 
 If you are interested in editing or developing the code in this project, see this
-[development documentation](development.md) to get started.
+[development documentation](DEVELOPMENT.md) to get started.
 
 ## Simulators with special requirements
 
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 00000000..faf45f93
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,26 @@
+[project]
+name = "pecos-workspace"
+version = "0.6.0.dev8"
+
+[tool.uv.workspace]
+members = [
+    "python/pecos-rslib",
+    "python/quantum-pecos"
+]
+
+[dependency-groups]
+dev = [
+    "maturin>=1.2,<2.0",  # For building (should match build requirements)
+    "setuptools>=62.6",      # Build system
+    "pre-commit",           # Git hooks
+    "black",               # Code formatting
+    "ruff",               # Fast Python linting
+]
+test = [ # pinning testing environment
+    "pytest==8.3.3", # 8.3.4 seems to be causing errors
+    "pytest-cov==6.0.0",
+    "hypothesis==6.122.3",
+]
+
+[tool.uv]
+default-groups = ["dev", "test"]
diff --git a/python/pecos-rslib/pyproject.toml b/python/pecos-rslib/pyproject.toml
index 1a7f45a4..689c9007 100644
--- a/python/pecos-rslib/pyproject.toml
+++ b/python/pecos-rslib/pyproject.toml
@@ -21,3 +21,6 @@ features = ["pyo3/extension-module"]
 python-source = "src"
 module-name = "pecos_rslib._pecos_rslib"
 manifest-path = "../../crates/pecos-python/Cargo.toml"
+
+[tool.uv.sources]
+pecos-rslib = { workspace = true }
diff --git a/python/quantum-pecos/pyproject.toml b/python/quantum-pecos/pyproject.toml
index 0e3f3fa8..0d3d4d72 100644
--- a/python/quantum-pecos/pyproject.toml
+++ b/python/quantum-pecos/pyproject.toml
@@ -58,7 +58,7 @@ repository = "https://github.com/PECOS-packages/PECOS"
 [project.optional-dependencies]
 projectq = [  # State-vector sims using ProjectQ
     "pybind11>=2.2.3",
-    "projectq",
+    "projectq>=0.5",
 ]
 wasmtime = [
     "wasmtime>=13.0"
@@ -66,28 +66,19 @@ wasmtime = [
 visualization = [
     "plotly~=5.9.0",
 ]
-tests = [
-    "pytest>=5.0.0,<8.3.4",  # 8.3.4 seems to be causing errors
-    "pytest-cov",
-    "hypothesis",
-]
 simulators = [
     "quantum-pecos[projectq]",
     "quantum-pecos[qulacs]; python_version < '3.13'",
     "quantum-pecos[pyquest]; python_version < '3.13'",
 ]
-wasm = [
+wasm-all = [
     "quantum-pecos[wasmtime]",
     "quantum-pecos[wasmer]",  # TODO: avoid installing for 3.13 and adjust tests for this
 ]
 all = [
-    "quantum-pecos[projectq]",
-    "quantum-pecos[wasmtime]",
+    "quantum-pecos[simulators]",
+    "quantum-pecos[wasm-all]",
     "quantum-pecos[visualization]",
-    "quantum-pecos[tests]",
-    "quantum-pecos[qulacs]; python_version < '3.13'",
-    "quantum-pecos[pyquest]; python_version < '3.13'",
-    "quantum-pecos[wasmer]",  # TODO: avoid installing for 3.13 and adjust tests for this
 ]
 # The following only work for some environments/Python verions:
 qulacs = [  # State-vector sims using Qulacs
@@ -100,13 +91,20 @@ wasmer = [
     "wasmer~=1.1.0", # Package not currently compatible with Python 3.13
     "wasmer_compiler_cranelift~=1.1.0",
 ]
-cuda = [
-    # CUDA dependencies. See README.md
-    "cupy>=10.4.0",
-    "cuquantum-python>=24.03.0",
-    "custatevec>=1.6.0",
-    "pytket-cutensornet>=0.7.0",
-]
+
+## CUDA dependencies. See README.md
+#cuda = [
+#    "cupy>=10.4.0",
+#    "cuquantum-python>=24.03.0",
+#    "custatevec>=1.6.0",
+#    "pytket-cutensornet>=0.7.0",
+#]
+
+[tool.uv]
+default-groups = ["dev", "test"]
+
+[tool.uv.sources]
+pecos-rslib = { workspace = true }
 
 [tool.hatch.metadata]
 allow-direct-references = true
diff --git a/python/quantum-pecos/requirements.txt b/python/quantum-pecos/requirements.txt
deleted file mode 100644
index d976b9bd..00000000
--- a/python/quantum-pecos/requirements.txt
+++ /dev/null
@@ -1,38 +0,0 @@
-#
-# This file is autogenerated by pip-compile with Python 3.13
-# by the following command:
-#
-#    pip-compile --extra=tests --no-annotate --no-emit-index-url --output-file=python/quantum-pecos/requirements.txt --strip-extras python/quantum-pecos/pyproject.toml
-#
-annotated-types==0.7.0
-attrs==24.2.0
-contourpy==1.3.1
-coverage==7.6.9
-cycler==0.12.1
-fonttools==4.55.2
-hypothesis==6.122.3
-iniconfig==2.0.0
-kiwisolver==1.4.7
-markdown-it-py==3.0.0
-matplotlib==3.9.3
-mdurl==0.1.2
-networkx==3.4.2
-numpy==2.2.0 ; python_version >= "3.13"
-packaging==24.2
-phir==0.3.3
-pillow==11.0.0
-pluggy==1.5.0
-pydantic==2.10.3
-pydantic-core==2.27.1
-pygments==2.18.0
-pyparsing==3.2.0
-pytest==8.3.3
-pytest-cov==6.0.0
-python-dateutil==2.9.0.post0
-rich==13.9.4
-scipy==1.14.1
-six==1.17.0
-sortedcontainers==2.4.0
-typing-extensions==4.12.2
-pecos-rslib==0.6.0.dev6
-numpy==1.26.4 ; python_version < "3.13"
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 00000000..37d8ee08
--- /dev/null
+++ b/uv.lock
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From 427797364e3b9d2a53501cdc7a817582d9241c61 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ciar=C3=A1n=20Ryan-Anderson?= <ciaranra@gmail.com>
Date: Mon, 16 Dec 2024 22:55:00 -0700
Subject: [PATCH 3/3] Turn on artifact generation (#117)

* More ignoring of cache issues in python-release.yml
---
 .github/workflows/python-release.yml | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/.github/workflows/python-release.yml b/.github/workflows/python-release.yml
index 7155f5b0..396d0a70 100644
--- a/.github/workflows/python-release.yml
+++ b/.github/workflows/python-release.yml
@@ -139,6 +139,11 @@ jobs:
         uses: astral-sh/setup-uv@v4
         with:
           enable-cache: true
+          ignore-nothing-to-cache: true
+          cache-dependency-glob: |
+            **/pyproject.toml
+            **/requirements*.txt
+            **/uv.lock
 
       - name: Remove conflicting README.md
         run: |
@@ -196,6 +201,11 @@ jobs:
         uses: astral-sh/setup-uv@v4
         with:
           enable-cache: true
+          ignore-nothing-to-cache: true
+          cache-dependency-glob: |
+            **/pyproject.toml
+            **/requirements*.txt
+            **/uv.lock
 
       - name: Download pecos-rslib wheel
         uses: actions/download-artifact@v4
@@ -251,6 +261,11 @@ jobs:
         uses: astral-sh/setup-uv@v4
         with:
           enable-cache: true
+          ignore-nothing-to-cache: true
+          cache-dependency-glob: |
+            **/pyproject.toml
+            **/requirements*.txt
+            **/uv.lock
 
       - name: Download pecos-rslib wheel
         uses: actions/download-artifact@v4