From 121c5755b3e3a3a3e289e02c1e8fa60ece530e09 Mon Sep 17 00:00:00 2001 From: whalleyt Date: Tue, 21 May 2024 11:12:22 +0100 Subject: [PATCH] update tbprofiler version, catch up bug fixes --- docker/Dockerfile.tbprofiler-0.9.8 | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/docker/Dockerfile.tbprofiler-0.9.8 b/docker/Dockerfile.tbprofiler-0.9.8 index b6390e1..4dc18e3 100644 --- a/docker/Dockerfile.tbprofiler-0.9.8 +++ b/docker/Dockerfile.tbprofiler-0.9.8 @@ -6,17 +6,16 @@ COPY resources/tuberculosis.fasta /data/tuberculosis.fasta USER root WORKDIR / -ARG TBPROFILER_VER="6.2.0" +ARG TBPROFILER_VER="6.2.1" # this version is the shortened commit hash on the `master` branch here https://github.com/jodyphelan/tbdb/ # commits are found on https://github.com/jodyphelan/tbdb/commits/master -# this was the latest commit as of 2024-05-01 - -ARG TBDB_VER="e6a0040" +# this was the latest commit as of 2024-05-21 +ARG TBDB_VER="a5e1d48" # LABEL instructions tag the image with metadata that might be important to the user LABEL base.image="micromamba:1.3.0" -LABEL dockerfile.version="1" +LABEL dockerfile.version="0.9.8" LABEL software="tbprofiler" LABEL software.version="${TBPROFILER_VER}" LABEL description="The pipeline aligns reads to the H37Rv reference using bowtie2, BWA or minimap2 and then calls variants using bcftools. These variants are then compared to a drug-resistance database." @@ -26,6 +25,8 @@ LABEL maintainer="John Arnn" LABEL maintainer.email="jarnn@utah.gov" LABEL maintainer2="Curtis Kapsak" LABEL maintainer2.email="kapsakcj@gmail.com" +LABEL maintainer3="Tom Whalley" +LABEL maintainer3.email="twhalley93@gmail.com" # Install dependencies via apt-get; cleanup apt garbage RUN apt-get update && apt-get install -y --no-install-recommends \ @@ -54,3 +55,4 @@ WORKDIR /data #wants full path to reference RUN tb-profiler update_tbdb --match_ref /data/tuberculosis.fasta --commit ${TBDB_VER} +