From 3ea28202a188b2475f7bb548beb41e9d9ae8d230 Mon Sep 17 00:00:00 2001 From: Tom Whalley Date: Wed, 16 Oct 2024 11:33:07 +0000 Subject: [PATCH] remove old containers --- docker/Dockerfile.vcfpredict-0.9.9 | 27 --------------------------- 1 file changed, 27 deletions(-) delete mode 100644 docker/Dockerfile.vcfpredict-0.9.9 diff --git a/docker/Dockerfile.vcfpredict-0.9.9 b/docker/Dockerfile.vcfpredict-0.9.9 deleted file mode 100644 index 9de1bb7..0000000 --- a/docker/Dockerfile.vcfpredict-0.9.9 +++ /dev/null @@ -1,27 +0,0 @@ -FROM ubuntu:20.04 - -LABEL maintainer="pricea35@cardiff.ac.uk" \ -about.summary="container for the vcf predict workflow" - -#add run-vcf to container -COPY bin/ /opt/bin/ -ENV PATH=/opt/bin:$PATH - -ENV PACKAGES="procps curl wget git build-essential libhdf5-dev libffi-dev r-base-core jq" \ -PYTHON="python3 python3-pip python3-dev" - -ENV vcfmix_version=d4693344bf612780723e39ce27c8ae3868f95417 - -#apt updates -RUN apt-get update \ -&& DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt-get -y install tzdata \ -&& apt-get install -y $PACKAGES $PYTHON \ -&& apt-get install -y python3-packaging \ -&& git clone https://github.com/JeremyWesthead/VCFMIX.git \ -&& cd VCFMIX \ -&& git checkout ${vcfmix_version} \ -&& pip3 install recursive_diff \ -&& pip3 install awscli \ -&& pip3 install . \ -&& cp -r data /usr/local/lib/python3.8/dist-packages \ -&& cd ..