From 78f149860d5e8183c7393250a737bdcfd44a813e Mon Sep 17 00:00:00 2001
From: whalleyt <whalleyt@cardiff.ac.uk>
Date: Wed, 6 Dec 2023 14:53:57 +0000
Subject: [PATCH] removed un-needed imports

---
 bin/identify_tophit_and_contaminants2.py | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/bin/identify_tophit_and_contaminants2.py b/bin/identify_tophit_and_contaminants2.py
index 9f15f04..1a627a2 100755
--- a/bin/identify_tophit_and_contaminants2.py
+++ b/bin/identify_tophit_and_contaminants2.py
@@ -6,10 +6,6 @@
 import argparse
 import re
 import copy
-import boto3
-import sys
-import configparser
-import pathlib
 
 # define process requirements function
 def process_requirements(args):
@@ -22,8 +18,6 @@ def process_requirements(args):
     myco_dir = args[6]
     prev_species_json = args[7]
     
-    credential_file = "~/.aws/config"
-    
     """
     # check if input files exist and not empty
     if not os.path.exists(afanc_json):