diff --git a/bin/run-vcfmix.py b/bin/run-vcfmix.py index eaeed3a..ecfe9c5 100755 --- a/bin/run-vcfmix.py +++ b/bin/run-vcfmix.py @@ -5,8 +5,7 @@ import urllib.request import json from pathlib import Path -#from vcfmix import lineageScan -from vcfScan import lineageScan +from vcfmix import lineageScan def go(vcf_file): # create a lineagescan object diff --git a/docker/Dockerfile.vcfpredict-0.9.9r1 b/docker/Dockerfile.vcfpredict-0.9.9r1 index f806965..4d34444 100644 --- a/docker/Dockerfile.vcfpredict-0.9.9r1 +++ b/docker/Dockerfile.vcfpredict-0.9.9r1 @@ -3,7 +3,6 @@ FROM ubuntu:20.04 LABEL maintainer="pricea35@cardiff.ac.uk" \ about.summary="container for the vcf predict workflow" - #add run-vcf to container COPY bin/ /opt/bin/ ENV PATH=/opt/bin:$PATH