From d003e8bb4776fdd76aa4aaedc3d6d44bda2be246 Mon Sep 17 00:00:00 2001
From: Tom Whalley <whalleyt@cardiff.ac.uk>
Date: Thu, 19 Sep 2024 11:50:59 +0000
Subject: [PATCH] update run vcf for minos flag

---
 bin/run-vcfmix.py                    | 3 +--
 docker/Dockerfile.vcfpredict-0.9.9r1 | 1 -
 2 files changed, 1 insertion(+), 3 deletions(-)

diff --git a/bin/run-vcfmix.py b/bin/run-vcfmix.py
index eaeed3a..ecfe9c5 100755
--- a/bin/run-vcfmix.py
+++ b/bin/run-vcfmix.py
@@ -5,8 +5,7 @@
 import urllib.request
 import json
 from pathlib import Path
-#from vcfmix import lineageScan
-from vcfScan import lineageScan
+from vcfmix import lineageScan
 
 def go(vcf_file):
     # create a lineagescan object
diff --git a/docker/Dockerfile.vcfpredict-0.9.9r1 b/docker/Dockerfile.vcfpredict-0.9.9r1
index f806965..4d34444 100644
--- a/docker/Dockerfile.vcfpredict-0.9.9r1
+++ b/docker/Dockerfile.vcfpredict-0.9.9r1
@@ -3,7 +3,6 @@ FROM ubuntu:20.04
 LABEL maintainer="pricea35@cardiff.ac.uk" \
 about.summary="container for the vcf predict workflow"
 
-
 #add run-vcf to container
 COPY bin/ /opt/bin/
 ENV PATH=/opt/bin:$PATH