From ea512cfcb762f2ffbf36cc7385a6b5142eba7b75 Mon Sep 17 00:00:00 2001 From: whalleyt Date: Fri, 14 Jun 2024 12:02:19 +0100 Subject: [PATCH] re-update tb-profiler container; conda missing version --- config/containers.config | 2 +- ...kerfile.tbprofiler-0.9.8 => Dockerfile.tbprofiler-0.9.8.1} | 0 ...larity.tbprofiler-0.9.8 => Singularity.tbprofiler-0.9.8.1} | 4 ++-- 3 files changed, 3 insertions(+), 3 deletions(-) rename docker/{Dockerfile.tbprofiler-0.9.8 => Dockerfile.tbprofiler-0.9.8.1} (100%) rename singularity/{Singularity.tbprofiler-0.9.8 => Singularity.tbprofiler-0.9.8.1} (98%) diff --git a/config/containers.config b/config/containers.config index a0983db..d64b23b 100644 --- a/config/containers.config +++ b/config/containers.config @@ -14,7 +14,7 @@ process { } withLabel:tbprofiler { - container = "quay.io/pathogen-genomics-cymru/tbprofiler:0.9.8" + container = "quay.io/pathogen-genomics-cymru/tbprofiler:0.9.8.1" } withName:downloadContamGenomes { diff --git a/docker/Dockerfile.tbprofiler-0.9.8 b/docker/Dockerfile.tbprofiler-0.9.8.1 similarity index 100% rename from docker/Dockerfile.tbprofiler-0.9.8 rename to docker/Dockerfile.tbprofiler-0.9.8.1 diff --git a/singularity/Singularity.tbprofiler-0.9.8 b/singularity/Singularity.tbprofiler-0.9.8.1 similarity index 98% rename from singularity/Singularity.tbprofiler-0.9.8 rename to singularity/Singularity.tbprofiler-0.9.8.1 index 8e25030..6420a76 100644 --- a/singularity/Singularity.tbprofiler-0.9.8 +++ b/singularity/Singularity.tbprofiler-0.9.8.1 @@ -24,12 +24,12 @@ su - root # USER root mkdir -p / cd / -TBPROFILER_VER="6.2.0" +TBPROFILER_VER="6.2.1" # this version is the shortened commit hash on the `master` branch here https://github.com/jodyphelan/tbdb/ # commits are found on https://github.com/jodyphelan/tbdb/commits/master # this was the latest commit as of 2023-10-26 -TBDB_VER="e6a0040" +TBDB_VER="a5e1d48" # LABEL instructions tag the image with metadata that might be important to the user