From f013273053fa224f7f3e7e118bcb4e1780c5445b Mon Sep 17 00:00:00 2001 From: whalleyt Date: Thu, 11 Jan 2024 10:31:13 +0000 Subject: [PATCH] tb-profiler docker container gatk --- docker/Dockerfile.tbprofiler-0.9.8 | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/docker/Dockerfile.tbprofiler-0.9.8 b/docker/Dockerfile.tbprofiler-0.9.8 index b7f6d80..b1f8b9a 100644 --- a/docker/Dockerfile.tbprofiler-0.9.8 +++ b/docker/Dockerfile.tbprofiler-0.9.8 @@ -35,9 +35,10 @@ RUN apt-get update && apt-get install -y --no-install-recommends \ # install tb-profiler via bioconda; install into 'base' conda env RUN micromamba install --yes --name base --channel conda-forge --channel bioconda \ - tb-profiler=${TBPROFILER_VER} && \ - micromamba install -c bioconda -c conda-forge gatk4 && \ - micromamba clean --all --yes + tb-profiler=${TBPROFILER_VER} + +RUN micromamba install -c bioconda -c conda-forge gatk4 +RUN micromamba clean --all --yes # hardcode 'base' env bin into PATH, so conda env does not have to be "activated" at run time ENV PATH="/opt/conda/bin:${PATH}"