From feaa247557b89cce1b7400f4488e519a0c712b27 Mon Sep 17 00:00:00 2001 From: Tom Whalley Date: Thu, 7 Nov 2024 13:57:31 +0000 Subject: [PATCH] readme --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 6ed01e7..3356f72 100644 --- a/README.md +++ b/README.md @@ -24,9 +24,9 @@ Note that while Mykrobe is included within this pipeline, it runs as an independ **WARNING**: There are currently known errors with vcfmix, as such `errorStrategy 'ignore'` has been added to the processes vcfpredict:vcfmix to stop the pipeline from crashing. Please check the stdout from nextflow to see whether these processes have ran successfully. ## Quick Start ## -This is a Nextflow DSL2 pipeline, it requires a version of Nextflow that supports DSL2 and the stub-run feature. It is recommended to run the pipeline with `NXF_VER=20.11.0-edge`, as the pipeline has been tested using this version. E.g. to download +This is a Nextflow DSL2 pipeline, it requires a version of Nextflow that supports DSL2 and the stub-run feature. It is recommended to run the pipeline with `NXF_VER="24.10.0"`, as the pipeline has been tested using this version. To download run: ``` -export NXF_VER="20.11.0-edge" +export NXF_VER="24.10.0" curl -fsSL https://get.nextflow.io | bash ```