From 26a2e658aa33754e8e91091b082f6ff239194a7f Mon Sep 17 00:00:00 2001
From: GitHub Documentation Robot <pecanproj@gmail.com>
Date: Tue, 4 Feb 2025 22:57:41 +0000
Subject: [PATCH] Build book from pecan revision
 f18497839749545ea11241d39afe5917287dcc8c

---
 develop/OutputStandards.html | 4 ++--
 develop/input-standards.html | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/develop/OutputStandards.html b/develop/OutputStandards.html
index d4b3ed29b..db341166c 100644
--- a/develop/OutputStandards.html
+++ b/develop/OutputStandards.html
@@ -783,8 +783,8 @@ <h2><span class="header-section-number">11.4</span> Output Standards<a href="inp
 <li>Can be seen at HERE</li>
 </ul>
 <p>We originally used the <a href="http://nacp.ornl.gov/MsTMIP_variables.shtml">MsTMIP</a> conventions. Since then, we’ve added the PaLEON variable conventions to our standard as well. If a variable isn’t in one of those two, we stick to the CF conventions.</p>
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E.g. 1, 1.25; 1.25, 1.5 ","decimal date in fractional years for middle of time averaging period","(decimal date beginning time ave period, decimal date end time ave period)","calender date middle of time ave period: year, month, day, hour, minute, second for UTC time zone","calender date beginning of time ave period: year, month, day, hour, minute, second for UTC time zone","calender date end of time ave period: year, month, day, hour, minute, second for UTC time zone","Rate of photosynthesis (always positive)","Net Ecosystem Exchange (NEE=HeteroResp+AutoResp-GPP, positive into atmosphere)","Total respiration (TotalResp=AutoResp+heteroResp, always positive)","Autotrophic respiration rate (always positive)","Heterotrophic respiration rate (always positive)","Sum of respiration in the soil by heterotrophs and by the roots of plants (autotrophs)","Loss of organic carbon dissolved in ground water or rivers (positive out of grid cell)","Flux of carbon due to fires (always positive)","Total carbon flux of litter, excluding coarse woody debris","Total carbon flux of surface litter","Total carbon flux of subsurface litter","Carbon flux of leaf litter","DALEC output; haven't yet resolved standard woody litter flux","Total carbon flux of woody debris, including downed woody debris and standing deadwood; excludes litter; size class defined by wdsize dimension","Net Primary Productivity (NPP=GPP-AutoResp, positive into plants)","Variable most analogous to tree-ring-derived change in stem biomass (before mortality/CWD flux)","Variable most analogous to flux of woody material material to the detrital pool resulting from mortality","Crop yield; ED2 output variable","Name of each carbon pool (i.e., wood or Coarse Woody Debris)","Total size of each carbon pool vertically integrated over the entire soil column","Total carbon content of the living biomass (leaves+roots+wood)","aboveground biomass","Area of leaves per area ground","Leaf carbon content","\nRoot carbon content, optionally by size class; alternatively specify fine_ and coarse_root_carbon_content","Carbon content of fine roots (2 mm and smaller); alternative to providing dimensions for root_carbon_content","Carbon content of coarse roots (larger than 2 mm); alternative to providing dimensions for root_carbon_content","Wood carbon content including above (AbvGrndWood) and below ground (coarse roots, shared with root_carbon_content)","Total above ground wood biomass","Total soil and litter carbon content vertically integrated over the enire soil column","Total carbon content of litter pool, excluding coarse woody debris","Carbon content of surface litter pool","Carbon content of subsurface litter pool; depth dimension optional","Carbon content of leaf litter pool","Carbon content of reproductive litter pool (e.g. seeds, flowers, cones, pollen)","Carbon content of uncategorized litter pool (e.g. insect excreta)","Carbon content of downed woody debris and standing deadwood; excludes litter; size classes defined by wdsize dimension","Total carbon content of soil layer, excluding litter","Total inorganic carbon content of soil layer (mineralized carbon such as carbonate)","Total organic carbon content of soil layer, excluding litter","Slow soil pool carbon content of soil layer","Fast soil pool carbon content of soil layer","Structural soil pool carbon content of soil layer","Total nitrogen content of soil layer","Total inorganic nitrogen content of soil layer (mineralized nitrogen)","Total organic nitrogen content of soil layer, excluding litter","Total phosphorus content of soil layer","Sensible heat flux into the boundary layer (positive into atmosphere)","Latent heat flux into the boundary layer (positive into atmosphere)","Ground heat flux; ED2 output variable","Rate of leaf conductance of water vapor from the leaf sub-stomatal cavities to the atmosphere","Sum of all evaporation sources (positive into atmosphere)","Deprecated, to be replaced by Transp. 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diff --git a/develop/input-standards.html b/develop/input-standards.html
index ae5a578e4..1f4e13882 100644
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+++ b/develop/input-standards.html
@@ -807,8 +807,8 @@ <h4><span class="header-section-number">11.3.1.1</span> Dimensions:<a href="inpu
 </div>
 <div id="variable-names-should-be-standard_name" class="section level4 hasAnchor" number="11.3.1.2">
 <h4><span class="header-section-number">11.3.1.2</span> Variable names should be <code>standard_name</code><a href="input-standards.html#variable-names-should-be-standard_name" class="anchor-section" aria-label="Anchor link to header"></a></h4>
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 <ul>
 <li>preferred variables indicated in bold</li>
 <li>wind_direction has no CF equivalent and should not be converted, instead the met2CF functions should convert wind_direction and wind_speed to eastward_wind and northward_wind</li>