Build book from pecan revision 08998d2c44d3a2190d9e731d525ba7c83c66f6b6

Author: GitHub Documentation Robot

develop/404.html

@@ -23,7 +23,7 @@
 <meta name="author" content="By: PEcAn Team" />
 
 
-<meta name="date" content="2024-09-08" />
+<meta name="date" content="2024-10-01" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -300,12 +300,13 @@
 <li class="chapter" data-level="11" data-path="pecan-standards.html"><a href="pecan-standards.html"><i class="fa fa-check"></i><b>11</b> PEcAn standard formats</a>
 <ul>
 <li class="chapter" data-level="11.1" data-path="defining-new-input-formats.html"><a href="defining-new-input-formats.html"><i class="fa fa-check"></i><b>11.1</b> Defining new input formats</a></li>
-<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a>
+<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a></li>
+<li class="chapter" data-level="11.3" data-path="input-standards.html"><a href="input-standards.html"><i class="fa fa-check"></i><b>11.3</b> Input Standards</a>
 <ul>
-<li class="chapter" data-level="11.2.1" data-path="time-standard.html"><a href="time-standard.html#input-standards"><i class="fa fa-check"></i><b>11.2.1</b> Input Standards</a></li>
-<li class="chapter" data-level="11.2.2" data-path="time-standard.html"><a href="time-standard.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.2.2</b> Soils and Vegetation Inputs</a></li>
-<li class="chapter" data-level="11.2.3" data-path="time-standard.html"><a href="time-standard.html#OutputStandards"><i class="fa fa-check"></i><b>11.2.3</b> Output Standards</a></li>
+<li class="chapter" data-level="11.3.1" data-path="input-standards.html"><a href="input-standards.html#meteorology-standards"><i class="fa fa-check"></i><b>11.3.1</b> Meteorology Standards</a></li>
+<li class="chapter" data-level="11.3.2" data-path="input-standards.html"><a href="input-standards.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.3.2</b> Soils and Vegetation Inputs</a></li>
 </ul></li>
+<li class="chapter" data-level="11.4" data-path="input-standards.html"><a href="input-standards.html#OutputStandards"><i class="fa fa-check"></i><b>11.4</b> Output Standards</a></li>
 </ul></li>
 <li class="chapter" data-level="12" data-path="pecanXML.html"><a href="pecanXML.html"><i class="fa fa-check"></i><b>12</b> The PEcAn XML</a>
 <ul>

develop/LoadData.html

@@ -23,7 +23,7 @@
 <meta name="author" content="By: PEcAn Team" />
 
 
-<meta name="date" content="2024-09-08" />
+<meta name="date" content="2024-10-01" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -300,12 +300,13 @@
 <li class="chapter" data-level="11" data-path="pecan-standards.html"><a href="pecan-standards.html"><i class="fa fa-check"></i><b>11</b> PEcAn standard formats</a>
 <ul>
 <li class="chapter" data-level="11.1" data-path="defining-new-input-formats.html"><a href="defining-new-input-formats.html"><i class="fa fa-check"></i><b>11.1</b> Defining new input formats</a></li>
-<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a>
+<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a></li>
+<li class="chapter" data-level="11.3" data-path="input-standards.html"><a href="input-standards.html"><i class="fa fa-check"></i><b>11.3</b> Input Standards</a>
 <ul>
-<li class="chapter" data-level="11.2.1" data-path="time-standard.html"><a href="time-standard.html#input-standards"><i class="fa fa-check"></i><b>11.2.1</b> Input Standards</a></li>
-<li class="chapter" data-level="11.2.2" data-path="time-standard.html"><a href="time-standard.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.2.2</b> Soils and Vegetation Inputs</a></li>
-<li class="chapter" data-level="11.2.3" data-path="time-standard.html"><a href="time-standard.html#OutputStandards"><i class="fa fa-check"></i><b>11.2.3</b> Output Standards</a></li>
+<li class="chapter" data-level="11.3.1" data-path="input-standards.html"><a href="input-standards.html#meteorology-standards"><i class="fa fa-check"></i><b>11.3.1</b> Meteorology Standards</a></li>
+<li class="chapter" data-level="11.3.2" data-path="input-standards.html"><a href="input-standards.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.3.2</b> Soils and Vegetation Inputs</a></li>
 </ul></li>
+<li class="chapter" data-level="11.4" data-path="input-standards.html"><a href="input-standards.html#OutputStandards"><i class="fa fa-check"></i><b>11.4</b> Output Standards</a></li>
 </ul></li>
 <li class="chapter" data-level="12" data-path="pecanXML.html"><a href="pecanXML.html"><i class="fa fa-check"></i><b>12</b> The PEcAn XML</a>
 <ul>
@@ -808,7 +809,7 @@ <h3><span class="header-section-number">18.1.3</span> Example<a href="LoadData.h
 <li>Create a connection to the BETY database. This can be done using R function</li>
 </ol>
 <div class="sourceCode" id="cb272"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb272-1"><a href="LoadData.html#cb272-1" aria-hidden="true" tabindex="-1"></a>bety <span class="ot">=</span> PEcAn.DB<span class="sc">::</span><span class="fu">betyConnect</span>(<span class="at">php.config =</span> <span class="st">&quot;pecan/web/config.php&quot;</span>)</span></code></pre></div>
-<p>where the complete path to the <code>config.php</code> is specified. See <a href="https://github.com/PecanProject/pecan/blob/master/web/config.example.php">here</a> for an example <code>config.php</code> file.</p>
+<p>where the complete path to the <code>config.php</code> is specified. See <a href="https://github.com/PecanProject/pecan/blob/main/web/config.example.php">here</a> for an example <code>config.php</code> file.</p>
 <ol start="2" style="list-style-type: decimal">
 <li>Look up the inputs record for the data in BETY.</li>
 </ol>

develop/NewBenchmark.html

@@ -23,7 +23,7 @@
 <meta name="author" content="By: PEcAn Team" />
 
 
-<meta name="date" content="2024-09-08" />
+<meta name="date" content="2024-10-01" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -300,12 +300,13 @@
 <li class="chapter" data-level="11" data-path="pecan-standards.html"><a href="pecan-standards.html"><i class="fa fa-check"></i><b>11</b> PEcAn standard formats</a>
 <ul>
 <li class="chapter" data-level="11.1" data-path="defining-new-input-formats.html"><a href="defining-new-input-formats.html"><i class="fa fa-check"></i><b>11.1</b> Defining new input formats</a></li>
-<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a>
+<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a></li>
+<li class="chapter" data-level="11.3" data-path="input-standards.html"><a href="input-standards.html"><i class="fa fa-check"></i><b>11.3</b> Input Standards</a>
 <ul>
-<li class="chapter" data-level="11.2.1" data-path="time-standard.html"><a href="time-standard.html#input-standards"><i class="fa fa-check"></i><b>11.2.1</b> Input Standards</a></li>
-<li class="chapter" data-level="11.2.2" data-path="time-standard.html"><a href="time-standard.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.2.2</b> Soils and Vegetation Inputs</a></li>
-<li class="chapter" data-level="11.2.3" data-path="time-standard.html"><a href="time-standard.html#OutputStandards"><i class="fa fa-check"></i><b>11.2.3</b> Output Standards</a></li>
+<li class="chapter" data-level="11.3.1" data-path="input-standards.html"><a href="input-standards.html#meteorology-standards"><i class="fa fa-check"></i><b>11.3.1</b> Meteorology Standards</a></li>
+<li class="chapter" data-level="11.3.2" data-path="input-standards.html"><a href="input-standards.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.3.2</b> Soils and Vegetation Inputs</a></li>
 </ul></li>
+<li class="chapter" data-level="11.4" data-path="input-standards.html"><a href="input-standards.html#OutputStandards"><i class="fa fa-check"></i><b>11.4</b> Output Standards</a></li>
 </ul></li>
 <li class="chapter" data-level="12" data-path="pecanXML.html"><a href="pecanXML.html"><i class="fa fa-check"></i><b>12</b> The PEcAn XML</a>
 <ul>

develop/NewFormat.html

@@ -23,7 +23,7 @@
 <meta name="author" content="By: PEcAn Team" />
 
 
-<meta name="date" content="2024-09-08" />
+<meta name="date" content="2024-10-01" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -300,12 +300,13 @@
 <li class="chapter" data-level="11" data-path="pecan-standards.html"><a href="pecan-standards.html"><i class="fa fa-check"></i><b>11</b> PEcAn standard formats</a>
 <ul>
 <li class="chapter" data-level="11.1" data-path="defining-new-input-formats.html"><a href="defining-new-input-formats.html"><i class="fa fa-check"></i><b>11.1</b> Defining new input formats</a></li>
-<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a>
+<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a></li>
+<li class="chapter" data-level="11.3" data-path="input-standards.html"><a href="input-standards.html"><i class="fa fa-check"></i><b>11.3</b> Input Standards</a>
 <ul>
-<li class="chapter" data-level="11.2.1" data-path="time-standard.html"><a href="time-standard.html#input-standards"><i class="fa fa-check"></i><b>11.2.1</b> Input Standards</a></li>
-<li class="chapter" data-level="11.2.2" data-path="time-standard.html"><a href="time-standard.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.2.2</b> Soils and Vegetation Inputs</a></li>
-<li class="chapter" data-level="11.2.3" data-path="time-standard.html"><a href="time-standard.html#OutputStandards"><i class="fa fa-check"></i><b>11.2.3</b> Output Standards</a></li>
+<li class="chapter" data-level="11.3.1" data-path="input-standards.html"><a href="input-standards.html#meteorology-standards"><i class="fa fa-check"></i><b>11.3.1</b> Meteorology Standards</a></li>
+<li class="chapter" data-level="11.3.2" data-path="input-standards.html"><a href="input-standards.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.3.2</b> Soils and Vegetation Inputs</a></li>
 </ul></li>
+<li class="chapter" data-level="11.4" data-path="input-standards.html"><a href="input-standards.html#OutputStandards"><i class="fa fa-check"></i><b>11.4</b> Output Standards</a></li>
 </ul></li>
 <li class="chapter" data-level="12" data-path="pecanXML.html"><a href="pecanXML.html"><i class="fa fa-check"></i><b>12</b> The PEcAn XML</a>
 <ul>

develop/NewInput.html

@@ -23,7 +23,7 @@
 <meta name="author" content="By: PEcAn Team" />
 
 
-<meta name="date" content="2024-09-08" />
+<meta name="date" content="2024-10-01" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -300,12 +300,13 @@
 <li class="chapter" data-level="11" data-path="pecan-standards.html"><a href="pecan-standards.html"><i class="fa fa-check"></i><b>11</b> PEcAn standard formats</a>
 <ul>
 <li class="chapter" data-level="11.1" data-path="defining-new-input-formats.html"><a href="defining-new-input-formats.html"><i class="fa fa-check"></i><b>11.1</b> Defining new input formats</a></li>
-<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a>
+<li class="chapter" data-level="11.2" data-path="time-standard.html"><a href="time-standard.html"><i class="fa fa-check"></i><b>11.2</b> Time Standard</a></li>
+<li class="chapter" data-level="11.3" data-path="input-standards.html"><a href="input-standards.html"><i class="fa fa-check"></i><b>11.3</b> Input Standards</a>
 <ul>
-<li class="chapter" data-level="11.2.1" data-path="time-standard.html"><a href="time-standard.html#input-standards"><i class="fa fa-check"></i><b>11.2.1</b> Input Standards</a></li>
-<li class="chapter" data-level="11.2.2" data-path="time-standard.html"><a href="time-standard.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.2.2</b> Soils and Vegetation Inputs</a></li>
-<li class="chapter" data-level="11.2.3" data-path="time-standard.html"><a href="time-standard.html#OutputStandards"><i class="fa fa-check"></i><b>11.2.3</b> Output Standards</a></li>
+<li class="chapter" data-level="11.3.1" data-path="input-standards.html"><a href="input-standards.html#meteorology-standards"><i class="fa fa-check"></i><b>11.3.1</b> Meteorology Standards</a></li>
+<li class="chapter" data-level="11.3.2" data-path="input-standards.html"><a href="input-standards.html#soils-and-vegetation-inputs"><i class="fa fa-check"></i><b>11.3.2</b> Soils and Vegetation Inputs</a></li>
 </ul></li>
+<li class="chapter" data-level="11.4" data-path="input-standards.html"><a href="input-standards.html#OutputStandards"><i class="fa fa-check"></i><b>11.4</b> Output Standards</a></li>
 </ul></li>
 <li class="chapter" data-level="12" data-path="pecanXML.html"><a href="pecanXML.html"><i class="fa fa-check"></i><b>12</b> The PEcAn XML</a>
 <ul>
@@ -834,7 +835,7 @@ <h5><span class="header-section-number">20.3.4.1.1</span> Adding a function to P
 <p>Conversion function from raw to standard are named <code>met2CF.&lt;source&gt;.R</code>. These functions are stored within the PEcAn directory: <a href="https://github.com/PecanProject/pecan/tree/develop/modules/data.atmosphere/R"><code>/modules/data.atmosphere/R</code></a>.</p>
 <p>Current Meteorological products that are coupled to PEcAn can be found in our <a href="met-drivers.html#met-drivers">Available Meteorological Drivers</a> page.</p>
 <p>Note: Unless you are also adding a new model, you will not need to write a script to convert from PEcAn standard to PEcAn models. Those conversion scripts are written when a model is added and can be found within each model’s PEcAn directory.</p>
-<p><em>Standards dimesion, names, nad units can be found here:</em> <a href="time-standard.html#input-standards">Input Standards</a></p>
+<p><em>Standards dimesion, names, nad units can be found here:</em> <a href="input-standards.html#input-standards">Input Standards</a></p>
 </div>
 <div id="adding-single-site-specific-meteorological-data" class="section level5 hasAnchor" number="20.3.4.1.2">
 <h5><span class="header-section-number">20.3.4.1.2</span> Adding Single-Site Specific Meteorological Data<a href="NewInput.html#adding-single-site-specific-meteorological-data" class="anchor-section" aria-label="Anchor link to header"></a></h5>