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‎curation/04_cubids_curation/v5/cubids_apply_5988484.err

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FATAL: Missing required source file.
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(1) Install package 'bash-completion'
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(2) $ source /usr/share/bash-completion/bash_completion
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(3) $ source slurm_completion.sh
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FATAL: Missing required source file.
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(1) Install package 'bash-completion'
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(2) $ source /usr/share/bash-completion/bash_completion
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(3) $ source slurm_completion.sh
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‎curation/04_cubids_curation/v5/cubids_apply_5988484.out

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Loading BIDS schema version: 0.11.3. BIDS version: 1.10.0
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nothing to save, working tree clean
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going to delete (2, 'datatype-fmap_direction-PA_fmap-epi_suffix-epi_acquisition-multiband')
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going to delete (1, 'datatype-func_run-01_suffix-bold_task-face_acquisition-singleband')
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going to delete (1, 'datatype-func_run-01_suffix-bold_task-fracback_acquisition-singleband')
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going to delete (1, 'datatype-func_run-01_suffix-bold_task-fracback_acquisition-singlebandVARIANTNumVolumes89')
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going to delete (1, 'datatype-func_run-01_suffix-bold_task-rest_acquisition-multiband')
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going to delete (1, 'datatype-func_run-01_suffix-bold_task-rest_acquisition-multibandVARIANTNumVolumes141')
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going to delete (1, 'datatype-func_run-01_suffix-bold_task-rest_acquisition-multibandVARIANTNumVolumes34')
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going to delete (1, 'datatype-func_run-01_suffix-bold_task-rest_acquisition-multibandVARIANTNumVolumes504')
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going to delete (1, 'datatype-func_run-02_suffix-bold_task-fracback_acquisition-singlebandVARIANTNumVolumes40')
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going to delete (1, 'datatype-func_suffix-bold_task-fracback_acquisition-singlebandVARIANTNumVolumes115')
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going to delete (1, 'datatype-func_suffix-bold_task-fracback_acquisition-singlebandVARIANTNumVolumes167')
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going to delete (1, 'datatype-func_suffix-bold_task-fracback_acquisition-singlebandVARIANTNumVolumes207')
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modified: sub-114723/ses-1/fmap/sub-114723_ses-1_magnitude1.json (file)
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modified: sub-114723/ses-1/fmap/sub-114723_ses-1_magnitude2.json (file)
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modified: sub-114723/ses-1/fmap/sub-114723_ses-1_phasediff.json (file)
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modified: sub-117226/ses-1/fmap/sub-117226_ses-1_magnitude1.json (file)
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modified: sub-117226/ses-1/fmap/sub-117226_ses-1_magnitude2.json (file)
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modified: sub-117226/ses-1/fmap/sub-117226_ses-1_phasediff.json (file)
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modified: sub-121407/ses-1/fmap/sub-121407_ses-1_magnitude1.json (file)
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modified: sub-121407/ses-1/fmap/sub-121407_ses-1_magnitude2.json (file)
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modified: sub-121407/ses-1/fmap/sub-121407_ses-1_phasediff.json (file)
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modified: sub-130121/ses-1/fmap/sub-130121_ses-1_magnitude1.json (file)
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modified: sub-130121/ses-1/fmap/sub-130121_ses-1_magnitude2.json (file)
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modified: sub-130121/ses-1/fmap/sub-130121_ses-1_phasediff.json (file)
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modified: sub-130896/ses-1/fmap/sub-130896_ses-1_magnitude1.json (file)
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modified: sub-130896/ses-1/fmap/sub-130896_ses-1_magnitude2.json (file)
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modified: sub-130896/ses-1/fmap/sub-130896_ses-1_phasediff.json (file)
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modified: sub-83372/ses-1/fmap/sub-83372_ses-1_magnitude1.json (file)
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modified: sub-83372/ses-1/fmap/sub-83372_ses-1_magnitude2.json (file)
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modified: sub-83372/ses-1/fmap/sub-83372_ses-1_phasediff.json (file)
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modified: sub-85083/ses-1/fmap/sub-85083_ses-1_magnitude1.json (file)
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modified: sub-85083/ses-1/fmap/sub-85083_ses-1_magnitude2.json (file)
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modified: sub-85083/ses-1/fmap/sub-85083_ses-1_phasediff.json (file)
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modified: sub-86924/ses-1/fmap/sub-86924_ses-1_magnitude1.json (file)
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modified: sub-86924/ses-1/fmap/sub-86924_ses-1_magnitude2.json (file)
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modified: sub-86924/ses-1/fmap/sub-86924_ses-1_phasediff.json (file)
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modified: sub-87346/ses-1/fmap/sub-87346_ses-1_magnitude1.json (file)
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modified: sub-87346/ses-1/fmap/sub-87346_ses-1_magnitude2.json (file)
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modified: sub-87346/ses-1/fmap/sub-87346_ses-1_phasediff.json (file)
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modified: sub-90077/ses-1/fmap/sub-90077_ses-1_magnitude1.json (file)
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modified: sub-90077/ses-1/fmap/sub-90077_ses-1_magnitude2.json (file)
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modified: sub-90077/ses-1/fmap/sub-90077_ses-1_phasediff.json (file)
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add(ok): sub-114723/ses-1/fmap/sub-114723_ses-1_magnitude1.json (file)
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add(ok): sub-114723/ses-1/fmap/sub-114723_ses-1_magnitude2.json (file)
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add(ok): sub-114723/ses-1/fmap/sub-114723_ses-1_phasediff.json (file)
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add(ok): sub-117226/ses-1/fmap/sub-117226_ses-1_magnitude1.json (file)
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add(ok): sub-117226/ses-1/fmap/sub-117226_ses-1_magnitude2.json (file)
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add(ok): sub-117226/ses-1/fmap/sub-117226_ses-1_phasediff.json (file)
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add(ok): sub-121407/ses-1/fmap/sub-121407_ses-1_magnitude1.json (file)
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add(ok): sub-121407/ses-1/fmap/sub-121407_ses-1_magnitude2.json (file)
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add(ok): sub-121407/ses-1/fmap/sub-121407_ses-1_phasediff.json (file)
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add(ok): sub-130121/ses-1/fmap/sub-130121_ses-1_magnitude1.json (file)
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add(ok): sub-130121/ses-1/fmap/sub-130121_ses-1_magnitude2.json (file)
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add(ok): sub-130121/ses-1/fmap/sub-130121_ses-1_phasediff.json (file)
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add(ok): sub-130896/ses-1/fmap/sub-130896_ses-1_magnitude1.json (file)
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add(ok): sub-130896/ses-1/fmap/sub-130896_ses-1_magnitude2.json (file)
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add(ok): sub-130896/ses-1/fmap/sub-130896_ses-1_phasediff.json (file)
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add(ok): sub-83372/ses-1/fmap/sub-83372_ses-1_magnitude1.json (file)
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add(ok): sub-83372/ses-1/fmap/sub-83372_ses-1_magnitude2.json (file)
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add(ok): sub-83372/ses-1/fmap/sub-83372_ses-1_phasediff.json (file)
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add(ok): sub-85083/ses-1/fmap/sub-85083_ses-1_magnitude1.json (file)
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add(ok): sub-85083/ses-1/fmap/sub-85083_ses-1_magnitude2.json (file)
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add(ok): sub-85083/ses-1/fmap/sub-85083_ses-1_phasediff.json (file)
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add(ok): sub-86924/ses-1/fmap/sub-86924_ses-1_magnitude1.json (file)
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add(ok): sub-86924/ses-1/fmap/sub-86924_ses-1_magnitude2.json (file)
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add(ok): sub-86924/ses-1/fmap/sub-86924_ses-1_phasediff.json (file)
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add(ok): sub-87346/ses-1/fmap/sub-87346_ses-1_magnitude1.json (file)
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add(ok): sub-87346/ses-1/fmap/sub-87346_ses-1_magnitude2.json (file)
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add(ok): sub-87346/ses-1/fmap/sub-87346_ses-1_phasediff.json (file)
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add(ok): sub-90077/ses-1/fmap/sub-90077_ses-1_magnitude1.json (file)
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add(ok): sub-90077/ses-1/fmap/sub-90077_ses-1_magnitude2.json (file)
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add(ok): sub-90077/ses-1/fmap/sub-90077_ses-1_phasediff.json (file)
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save(ok): . (dataset)
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action summary:
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add (ok: 30)
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save (ok: 1)
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run(ok): /cbica/projects/grmpy/data/bids_datalad (dataset) [bash /cbica/projects/grmpy/data/_full_cm...]
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delete(ok): sub-114723/ses-1/func/sub-114723_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes115_bold.json (file)
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delete(ok): sub-114723/ses-1/func/sub-114723_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes115_bold.nii.gz (symlink)
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delete(ok): sub-117226/ses-1/func/sub-117226_ses-1_task-rest_acq-multibandVARIANTNumVolumes504_run-01_bold.json (file)
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delete(ok): sub-117226/ses-1/func/sub-117226_ses-1_task-rest_acq-multibandVARIANTNumVolumes504_run-01_bold.nii.gz (symlink)
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delete(ok): sub-121407/ses-1/func/sub-121407_ses-1_task-rest_acq-multibandVARIANTNumVolumes34_run-01_bold.json (file)
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delete(ok): sub-121407/ses-1/func/sub-121407_ses-1_task-rest_acq-multibandVARIANTNumVolumes34_run-01_bold.nii.gz (symlink)
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delete(ok): sub-130121/ses-1/func/sub-130121_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes40_run-02_bold.json (file)
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delete(ok): sub-130121/ses-1/func/sub-130121_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes40_run-02_bold.nii.gz (symlink)
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delete(ok): sub-130121/ses-1/func/sub-130121_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes89_run-01_bold.json (file)
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delete(ok): sub-130121/ses-1/func/sub-130121_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes89_run-01_bold.nii.gz (symlink)
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delete(ok): sub-130896/ses-1/func/sub-130896_ses-1_task-face_acq-singleband_run-01_bold.json (file)
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delete(ok): sub-130896/ses-1/func/sub-130896_ses-1_task-face_acq-singleband_run-01_bold.nii.gz (symlink)
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delete(ok): sub-83372/ses-1/func/sub-83372_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes207_bold.json (file)
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delete(ok): sub-83372/ses-1/func/sub-83372_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes207_bold.nii.gz (symlink)
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delete(ok): sub-85083/ses-1/func/sub-85083_ses-1_task-rest_acq-multiband_run-01_bold.json (file)
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delete(ok): sub-85083/ses-1/func/sub-85083_ses-1_task-rest_acq-multiband_run-01_bold.nii.gz (symlink)
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delete(ok): sub-86924/ses-1/func/sub-86924_ses-1_task-rest_acq-multibandVARIANTNumVolumes141_run-01_bold.json (file)
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delete(ok): sub-86924/ses-1/func/sub-86924_ses-1_task-rest_acq-multibandVARIANTNumVolumes141_run-01_bold.nii.gz (symlink)
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delete(ok): sub-87346/ses-1/func/sub-87346_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes167_bold.json (file)
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delete(ok): sub-87346/ses-1/func/sub-87346_ses-1_task-fracback_acq-singlebandVARIANTNumVolumes167_bold.nii.gz (symlink)
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delete(ok): sub-90077/ses-1/func/sub-90077_ses-1_task-fracback_acq-singleband_run-01_bold.json (file)
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delete(ok): sub-90077/ses-1/func/sub-90077_ses-1_task-fracback_acq-singleband_run-01_bold.nii.gz (symlink)
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delete(ok): sub-93856/ses-1/fmap/sub-93856_ses-1_acq-multiband_dir-PA_epi.bval (file)
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delete(ok): sub-93856/ses-1/fmap/sub-93856_ses-1_acq-multiband_dir-PA_epi.bvec (file)
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delete(ok): sub-93856/ses-1/fmap/sub-93856_ses-1_acq-multiband_dir-PA_epi.json (file)
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delete(ok): sub-93856/ses-1/fmap/sub-93856_ses-1_acq-multiband_dir-PA_epi.nii.gz (symlink)
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save(ok): . (dataset)
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Not running any commands
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CuBIDS detected 58 Parameter Groups.
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Groupings info is available in
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* /cbica/projects/grmpy/code/curation/04_cubids_curation/v5/v5_files.tsv
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* /cbica/projects/grmpy/code/curation/04_cubids_curation/v5/v5_files.json
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* /cbica/projects/grmpy/code/curation/04_cubids_curation/v5/v5_summary.tsv
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* /cbica/projects/grmpy/code/curation/04_cubids_curation/v5/v5_summary.json
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‎curation/04_cubids_curation/v5/v5_AcqGroupInfo.json

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{
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"AcqGroupInfo.txt Data Dictionary": {
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"Long Description": "Acquisition Group Info",
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"Description": "https://cubids.readthedocs.io/en/latest/usage.html",
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"Version": "CuBIDS v1.0.5"
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}
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}

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