added setup.py

Former-commit-id: ca167c2

Author: PolarBean

Diff for: .gitignore

@@ -14,8 +14,7 @@ utilities/__pycache__/QuickNII_functions.cpython-37.pyc
 DeepSlice/metadata/volumes/*.nii
 DeepSlice/metadata/weights/*.h5
 DeepSlice/metadata/weights/*.hdf5
-setup.py
-setup.cfg
+
 dist
 # Distribution / packaging
 bin/

Diff for: setup.cfg

@@ -0,0 +1,2 @@
+[metadata]
+description-file = README.md

Diff for: setup.py

@@ -0,0 +1,44 @@
+from distutils.core import setup
+from setuptools import find_packages
+from pathlib import Path
+
+
+
+this_directory = Path(__file__).parent
+long_description = (this_directory / "README.md").read_text()
+
+setup(
+    name='DeepSlice',
+    packages=find_packages(),
+    version='1.0.6',
+    license='GPL-3.0',
+    description='A package to align histology to 3D brain atlases',
+    long_description=long_description,
+    long_description_content_type='text/markdown',
+    author='DeepSlice Team',
+    package_data={'DeepSlice': ['metadata/volumes/placeholder.txt', 'metadata/config.json','metadata/weights/*.txt']},
+    include_package_data=True,
+    author_email='[email protected]',
+    url='https://github.com/PolarBean/DeepSlice',
+    download_url='https://github.com/PolarBean/DeepSlice/archive/refs/tags/1.0.6.tar.gz',
+    keywords=['histology', 'brain', 'atlas', 'alignment'],
+    install_requires=[
+        'numpy',
+        'scikit-learn',
+        'scikit-image',
+        'tensorflow==1.15.0',
+        'h5py==2.10.0',
+        'typing',
+        'pandas==1.3.5',
+        'requests',
+        'protobuf==3.20'
+    ],
+    classifiers=[
+        'Development Status :: 5 - Production/Stable',
+        'Intended Audience :: Science/Research',
+        'Topic :: Scientific/Engineering :: Bio-Informatics',
+        'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+        'Programming Language :: Python :: 3.7',
+    ],
+
+)