From dd9310e302304db70244d92a2887061f96ac532e Mon Sep 17 00:00:00 2001 From: Jake Fennick Date: Wed, 3 Apr 2024 20:28:06 -1000 Subject: [PATCH] remove unused fake news inputs --- workflows/bbbc.py | 1 - workflows/bbbc_sub.py | 2 -- 2 files changed, 3 deletions(-) diff --git a/workflows/bbbc.py b/workflows/bbbc.py index 35ba536..1967241 100644 --- a/workflows/bbbc.py +++ b/workflows/bbbc.py @@ -11,7 +11,6 @@ def workflow() -> Workflow: subdirectory = Step(clt_path='../workflow-inference-compiler/cwl_adapters/subdirectory.cwl') subdirectory.directory = bbbcdownload.outDir subdirectory.glob_pattern = 'bbbcdownload.outDir/BBBC/BBBC001/raw/Images/human_ht29_colon_cancer_1_images/' - subdirectory.subdirectory = Path('subdirectory.subdirectory') filerenaming = Step(clt_path='../image-workflows/cwl_adapters/file-renaming.cwl') # NOTE: FilePattern {} syntax shadows python f-string {} syntax diff --git a/workflows/bbbc_sub.py b/workflows/bbbc_sub.py index 6b6f102..d9bf005 100644 --- a/workflows/bbbc_sub.py +++ b/workflows/bbbc_sub.py @@ -13,7 +13,6 @@ def workflow() -> Workflow: subdirectory = Step(clt_path='../workflow-inference-compiler/cwl_adapters/subdirectory.cwl') subdirectory.directory = bbbcdownload.outDir subdirectory.glob_pattern = 'bbbcdownload.outDir/BBBC/BBBC001/raw/Images/human_ht29_colon_cancer_1_images/' - subdirectory.subdirectory = Path('subdirectory.subdirectory') filerenaming = Step(clt_path='cwl_adapters/file-renaming.cwl') # NOTE: FilePattern {} syntax shadows python f-string {} syntax @@ -46,7 +45,6 @@ def workflow2() -> Workflow: # i.e. This is the API for the subworkflow. subworkflow.steps[0].directory = subworkflow.directory subworkflow.steps[0].glob_pattern = subworkflow.glob_pattern - subworkflow.steps[0].subdirectory = Path('subdirectory.subdirectory') # Then apply arguments at the call site. # Notice how the caller does not need to know about the internal details of the subworkflow