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1 parent ccb25e8 commit d55bd19Copy full SHA for d55bd19
workflows/litscan/litscan-search-new-ids.nf
@@ -90,6 +90,7 @@ process submit_ids {
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if [ -s new_ids.txt ]; then
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# new_ids.txt is not empty
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# get original ids (not in lowercase)
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+ # TODO: improve performance. This step may take a long time depending on the number of IDs.
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while IFS= read -r line; do
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grep -ixF "\$line" all_ids.txt | head -1 >> results.txt
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done < new_ids.txt
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