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Look into ingest of RHEA into RTX-KG2 #428

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saramsey opened this issue Jan 27, 2025 · 0 comments
Open

Look into ingest of RHEA into RTX-KG2 #428

saramsey opened this issue Jan 27, 2025 · 0 comments

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@saramsey
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From Stephanie Won's Slack post:

I uncovered some prefixes missing from RTX-KG2 when node synonymizing the MicrobiomeKG data: RHEA, EUPATH, GTOPB, UNII, PANTHER.FAMILY, PANTHER.PATHWAY.

  1. RHEA seems to be from here. These are novel groups of CHEBI identifiers that react or combine to produce other CHEBI identifiers. I would like the ARAX team’s insight on handling these CHEBI proxies (?) identifiers and whether including them would be a good idea.
  2. EUPATH prefix enteries are from EuPathDB,
  3. GTOPB is from here,
  4. UNII looks like FDA drug identifiers…
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