Search results

SPRAS in Spack?

discussionFurther information is requestedFurther information is requested

enhancementNew feature or requestNew feature or request

Status: Open.

#430 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 25, 2025

PAPER

algorithmPathway reconstruction algorithm to add to SPRASPathway reconstruction algorithm to add to SPRAS

Status: Open.

#428 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 21, 2025

FDRnet

algorithmPathway reconstruction algorithm to add to SPRASPathway reconstruction algorithm to add to SPRAS

Status: Open.

#425 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 20, 2025

Evaluation and Aggregation of Active Module Identification Algorithms

discussionFurther information is requestedFurther information is requested

Status: Open.

#424 In Reed-CompBio/spras;

· agitter opened on Oct 19, 2025

SPRAS tutorial 2025-10-13 notes

discussionFurther information is requestedFurther information is requested

Status: Open.

#413 In Reed-CompBio/spras;

· agitter opened on Oct 13, 2025

SPRAS CLI

enhancementNew feature or requestNew feature or request

Status: Open.

#410 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 10, 2025

Generate cytoscape session files manually

enhancementNew feature or requestNew feature or request

performanceissues related to runtimeissues related to runtime

Status: Open.

#409 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 9, 2025

Make Docker/Apptainer image cache configurable

Status: Open.

#404 In Reed-CompBio/spras;

· jhiemstrawisc opened on Oct 2, 2025

<code>active_threshold</code> for <code>active</code>-requiring algorithms.

enhancementNew feature or requestNew feature or request

Status: Open.

#403 In Reed-CompBio/spras;

· tristan-f-r opened on Sep 30, 2025

Tracking nondeterminism

discussionFurther information is requestedFurther information is requested

Status: Open.

#398 In Reed-CompBio/spras;

· tristan-f-r opened on Sep 24, 2025

Better UX when running snakemake_long.py

enhancementNew feature or requestNew feature or request

Status: Open.

#395 In Reed-CompBio/spras;

· tristan-f-r opened on Sep 23, 2025

Algorithm compatibility errors

enhancementNew feature or requestNew feature or request

refactorChanges that don't actually improve anything except for code quality.Changes that don't actually improve anything except for code quality.

Status: Open.

#393 In Reed-CompBio/spras;

· tristan-f-r opened on Sep 19, 2025