DESCRIPTION

Package: uORFomePipe
Type: Package
Title: uORF prediction in R
Version: 0.2.2
Author: Hakon Tjeldnes
Authors@R: c(
  person(given = "Haakon", family = "Tjeldnes", email = "hauken_heyken@hotmail.com", role = c("aut", "cre", "dtc")),
  person(given = "Evind", family = "Valen", email = "eivind.valen@gmail.com", role = c("ths", "fnd")))
Description: Prediction of uORFs in varying tissues / stages,
  using the ORFik package as back-end and the presumption that active / translated 
  uORFs should have similar Ribo-seq patterns to (coding sequences) CDS'.
  Uses a Random forrest (from H2o.ai) trained on Ribo-seq features.
biocViews: ImmunoOncology, Software, Sequencing, RiboSeq, RNASeq, FunctionalGenomics, Coverage, Alignment, DataImport
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends:
  R (>= 3.6.0),
  ORFik,
  GenomicRanges,
  DBI, 
  data.table
Imports:
  BiocParallel, 
  biomaRt,
  biomartr,
  cowplot,
  ggplot2,
  ggpubr,
  gridExtra,
  h2o,
  RSQLite,
  scales,
  tools,
  VennDiagram
RoxygenNote: 7.2.3