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Tweak graph_db to run example script #4

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JDRomano2 opened this issue May 4, 2021 · 0 comments
Open

Tweak graph_db to run example script #4

JDRomano2 opened this issue May 4, 2021 · 0 comments
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@ricsuh
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enhancement New feature or request

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@JDRomano2
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The following example script should be used as a template for the "neo4j -> pytorch" method:

>>> from comptox_ai.db.graph_db import GraphDB
>>> db = GraphDB()
>>> db.create_graph_native_projection(name='example_graph', node_types=['ns0__Gene', 'ns0__StructuralEntity', 'ns0__Disease'])
>>> db.to_pytorch(graph_name='example_graph')

The to_pytorch() method should return a torch_geometric.data.Dataset object, as described on this page: https://pytorch-geometric.readthedocs.io/en/latest/notes/create_dataset.html
@JDRomano2 JDRomano2 added the enhancement New feature or request label May 4, 2021
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@ricsuh ricsuh

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@JDRomano2 @ricsuh