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Change the pass of NCBI BLAST #9

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kokitsuyuzaki opened this issue Dec 27, 2017 · 0 comments
Open

Change the pass of NCBI BLAST #9

kokitsuyuzaki opened this issue Dec 27, 2017 · 0 comments

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@kokitsuyuzaki
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Hi,

Your Dockerfile of LocTree3 in README.md may not work properly, because of change the pass of NCBI BLAST.

I changed the Dockerfile as follows and "docker build" ran successfully, though I don't know this make LocTree3 analyze real data properly.

FROM ubuntu:14.04
RUN apt-get -y update && apt-get install -y wget unzip automake make libconfig-inifiles-perl pp-popularity-contest
RUN wget -q https://github.com/Rostlab/LocTree3/archive/develop.zip && unzip -q develop.zip
RUN cd LocTree3-develop && aclocal && autoconf && autoheader; automake --add-missing && ./configure && make && make install
RUN wget -q ftp://ftp.ncbi.nlm.nih.gov/blast/executables//blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz && tar xf ncbi-blast-2.7.1+-x64-linux.tar.gz
RUN /bin/echo -e "[NCBI]\nData=/ncbi-blast-2.7.1+/data/" > ~/.ncbirc && /bin/echo -e "export PATH=$PATH:/ncbi-blast-2.7.1+/bin" >> ~/.bashrc
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