Skip to content

Commit 1417044

Browse files
author
Maria Littmann
committed
SARS-CoV-2 predictions added
1 parent 09acd64 commit 1417044

6 files changed

+305
-0
lines changed

‎SARS-CoV-2_predictions/predictions_protbert_bpo.txt

+48
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,48 @@
1+
P0DTD1 GO:0051301 cell division
2+
P0DTD1 GO:0009617 response to bacterium
3+
P0DTD1 GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
4+
P0DTD1 GO:0007601 visual perception
5+
P0DTD1 GO:0007049 cell cycle
6+
P0DTD1 GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
7+
P0DTC1 GO:0039548 suppression by virus of host IRF3 activity
8+
P0DTC1 GO:0039520 induction by virus of host autophagy
9+
P0DTC1 GO:0039595 induction by virus of catabolism of host mRNA
10+
P0DTC1 GO:0019079 viral genome replication
11+
P0DTC1 GO:0019082 viral protein processing
12+
P0DTC1 GO:0006508 proteolysis
13+
P0DTC1 GO:0039502 suppression by virus of host type I interferon-mediated signaling pathway
14+
P0DTC1 GO:0039648 modulation by virus of host protein ubiquitination
15+
P0DTC1 GO:0039579 suppression by virus of host ISG15 activity
16+
P0DTC1 GO:0001172 transcription, RNA-templated
17+
P0DTC2 GO:0046718 viral entry into host cell
18+
P0DTC2 GO:0019064 fusion of virus membrane with host plasma membrane
19+
P0DTC2 GO:0046813 receptor-mediated virion attachment to host cell
20+
P0DTC2 GO:0009405 pathogenesis
21+
P0DTC2 GO:0039654 fusion of virus membrane with host endosome membrane
22+
P0DTC2 GO:0075509 endocytosis involved in viral entry into host cell
23+
P0DTC3 GO:0051259 protein complex oligomerization
24+
P0DTC3 GO:0039511 suppression by virus of host interferon receptor activity
25+
P0DTC3 GO:0034220 ion transmembrane transport
26+
P0DTC3 GO:0039502 suppression by virus of host type I interferon-mediated signaling pathway
27+
P0DTC3 GO:0039707 pore formation by virus in membrane of host cell
28+
P0DTC4 GO:0046760 viral budding from Golgi membrane
29+
P0DTC4 GO:0044662 disruption by virus of host cell membrane
30+
P0DTC5 GO:0030683 evasion or tolerance by virus of host immune response
31+
P0DTC5 GO:0019058 viral life cycle
32+
P0DTC6 GO:0016236 macroautophagy
33+
P0DTC6 GO:0006260 DNA replication
34+
P0DTC7 GO:0039646 modulation by virus of host G0/G1 transition checkpoint
35+
P0DTD8 GO:0001878 response to yeast
36+
P0DTD8 GO:0046513 ceramide biosynthetic process
37+
P0DTD8 GO:1904220 regulation of serine C-palmitoyltransferase activity
38+
P0DTD8 GO:0007029 endoplasmic reticulum organization
39+
P0DTC8 GO:0010951 negative regulation of endopeptidase activity
40+
P0DTC9 GO:0051123 RNA polymerase II preinitiation complex assembly
41+
P0DTC9 GO:0045944 positive regulation of transcription by RNA polymerase II
42+
P0DTC9 GO:0001113 transcriptional open complex formation at RNA polymerase II promoter
43+
P0DTC9 GO:0000122 negative regulation of transcription by RNA polymerase II
44+
A0A663DJA2 GO:0006487 protein N-linked glycosylation
45+
P0DTD2 GO:0043248 proteasome assembly
46+
P0DTD3 GO:0045058 T cell selection
47+
P0DTD3 GO:0002250 adaptive immune response
48+
P0DTD3 GO:0030217 T cell differentiation

‎SARS-CoV-2_predictions/predictions_protbert_cco.txt

+65
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,65 @@
1+
P0DTD1 GO:0032154 cleavage furrow
2+
P0DTD1 GO:0070062 extracellular exosome
3+
P0DTD1 GO:0005576 extracellular region
4+
P0DTD1 GO:0005604 basement membrane
5+
P0DTD1 GO:0005938 cell cortex
6+
P0DTD1 GO:0005912 adherens junction
7+
P0DTC1 GO:0033644 host cell membrane
8+
P0DTC1 GO:0030430 host cell cytoplasm
9+
P0DTC1 GO:0016020 membrane
10+
P0DTC1 GO:0044220 host cell perinuclear region of cytoplasm
11+
P0DTC1 GO:0016021 integral component of membrane
12+
P0DTC2 GO:0019031 viral envelope
13+
P0DTC2 GO:0019012 virion
14+
P0DTC2 GO:0020002 host cell plasma membrane
15+
P0DTC2 GO:0044173 host cell endoplasmic reticulum-Golgi intermediate compartment membrane
16+
P0DTC2 GO:0055036 virion membrane
17+
P0DTC2 GO:0016021 integral component of membrane
18+
P0DTC3 GO:0030430 host cell cytoplasm
19+
P0DTC3 GO:0019012 virion
20+
P0DTC3 GO:0005576 extracellular region
21+
P0DTC3 GO:0044385 integral to membrane of host cell
22+
P0DTC3 GO:0016020 membrane
23+
P0DTC3 GO:0044178 host cell Golgi membrane
24+
P0DTC3 GO:0044177 host cell Golgi apparatus
25+
P0DTC3 GO:0020002 host cell plasma membrane
26+
P0DTC3 GO:0016021 integral component of membrane
27+
P0DTC4 GO:0044172 host cell endoplasmic reticulum-Golgi intermediate compartment
28+
P0DTC4 GO:0016020 membrane
29+
P0DTC4 GO:0044178 host cell Golgi membrane
30+
P0DTC4 GO:0044177 host cell Golgi apparatus
31+
P0DTC4 GO:0016021 integral component of membrane
32+
P0DTC5 GO:0019031 viral envelope
33+
P0DTC5 GO:0030430 host cell cytoplasm
34+
P0DTC5 GO:0019012 virion
35+
P0DTC5 GO:0044178 host cell Golgi membrane
36+
P0DTC5 GO:0044177 host cell Golgi apparatus
37+
P0DTC5 GO:0055036 virion membrane
38+
P0DTC5 GO:0016021 integral component of membrane
39+
P0DTC6 GO:0005886 plasma membrane
40+
P0DTC6 GO:0016021 integral component of membrane
41+
P0DTC7 GO:0019012 virion
42+
P0DTC7 GO:0016020 membrane
43+
P0DTC7 GO:0044167 host cell endoplasmic reticulum membrane
44+
P0DTC7 GO:0044178 host cell Golgi membrane
45+
P0DTC7 GO:0044165 host cell endoplasmic reticulum
46+
P0DTC7 GO:0044177 host cell Golgi apparatus
47+
P0DTC7 GO:0044173 host cell endoplasmic reticulum-Golgi intermediate compartment membrane
48+
P0DTC7 GO:0016021 integral component of membrane
49+
P0DTD8 GO:0033644 host cell membrane
50+
P0DTD8 GO:0016020 membrane
51+
P0DTD8 GO:0016021 integral component of membrane
52+
P0DTC8 GO:0005773 vacuole
53+
P0DTC9 GO:0030430 host cell cytoplasm
54+
P0DTC9 GO:0044172 host cell endoplasmic reticulum-Golgi intermediate compartment
55+
P0DTC9 GO:0019012 virion
56+
P0DTC9 GO:0019013 viral nucleocapsid
57+
P0DTC9 GO:0044220 host cell perinuclear region of cytoplasm
58+
P0DTC9 GO:0044177 host cell Golgi apparatus
59+
A0A663DJA2 GO:0016020 membrane
60+
A0A663DJA2 GO:0016021 integral component of membrane
61+
P0DTD2 GO:0030430 host cell cytoplasm
62+
P0DTD2 GO:0016020 membrane
63+
P0DTD2 GO:0044162 host cell cytoplasmic vesicle membrane
64+
P0DTD2 GO:0044161 host cell cytoplasmic vesicle
65+
P0DTD3 GO:0016020 membrane

‎SARS-CoV-2_predictions/predictions_protbert_mfo.txt

+31
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,31 @@
1+
P0DTD1 GO:0005509 calcium ion binding
2+
P0DTD1 GO:0005201 extracellular matrix structural constituent
3+
P0DTD1 GO:0050839 cell adhesion molecule binding
4+
P0DTD1 GO:0038023 signaling receptor activity
5+
P0DTD1 GO:0042803 protein homodimerization activity
6+
P0DTC1 GO:0003968 RNA-directed 5'-3' RNA polymerase activity
7+
P0DTC1 GO:0008270 zinc ion binding
8+
P0DTC1 GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
9+
P0DTC1 GO:0003723 RNA binding
10+
P0DTC1 GO:0004197 cysteine-type endopeptidase activity
11+
P0DTC1 GO:0008242 omega peptidase activity
12+
P0DTC2 GO:0046789 host cell surface receptor binding
13+
P0DTC2 GO:0042802 identical protein binding
14+
P0DTC3 GO:0005216 ion channel activity
15+
P0DTC4 GO:0097020 COPII adaptor activity
16+
P0DTC5 GO:0039660 structural constituent of virion
17+
P0DTC6 GO:0015459 potassium channel regulator activity
18+
P0DTC7 GO:0008009 chemokine activity
19+
P0DTC7 GO:0016004 phospholipase activator activity
20+
P0DTC7 GO:0048020 CCR chemokine receptor binding
21+
P0DTC7 GO:0042056 chemoattractant activity
22+
P0DTC7 GO:0004698 calcium-dependent protein kinase C activity
23+
P0DTD8 GO:0004758 serine C-palmitoyltransferase activity
24+
P0DTC8 GO:0004869 cysteine-type endopeptidase inhibitor activity
25+
P0DTC9 GO:0003723 RNA binding
26+
A0A663DJA2 GO:0015181 arginine transmembrane transporter activity
27+
A0A663DJA2 GO:0015189 L-lysine transmembrane transporter activity
28+
P0DTD2 GO:0005515 protein binding
29+
P0DTD2 GO:0009055 electron transfer activity
30+
P0DTD3 GO:0008083 growth factor activity
31+
P0DTD3 GO:0008009 chemokine activity

‎SARS-CoV-2_predictions/predictions_seqvec_bpo.txt

+54
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,54 @@
1+
A0A663DJA2 GO:0010930 negative regulation of auxin mediated signaling pathway
2+
A0A663DJA2 GO:0048364 root development
3+
A0A663DJA2 GO:0009734 auxin-activated signaling pathway
4+
P0DTD8 GO:0046740 transport of virus in host, cell to cell
5+
P0DTC6 GO:0009405 pathogenesis
6+
P0DTD3 GO:0007283 spermatogenesis
7+
P0DTD3 GO:0043065 positive regulation of apoptotic process
8+
P0DTC4 GO:0046760 viral budding from Golgi membrane
9+
P0DTC4 GO:0044662 disruption by virus of host cell membrane
10+
P0DTD2 GO:0006412 translation
11+
P0DTC7 GO:0039646 modulation by virus of host G0/G1 transition checkpoint
12+
P0DTC8 GO:0006954 inflammatory response
13+
P0DTC8 GO:0045087 innate immune response
14+
P0DTC8 GO:0031666 positive regulation of lipopolysaccharide-mediated signaling pathway
15+
P0DTC5 GO:0019058 viral life cycle
16+
P0DTC5 GO:0030683 evasion or tolerance by virus of host immune response
17+
P0DTC3 GO:0034220 ion transmembrane transport
18+
P0DTC3 GO:0039707 pore formation by virus in membrane of host cell
19+
P0DTC3 GO:0051259 protein complex oligomerization
20+
P0DTC9 GO:0000413 protein peptidyl-prolyl isomerization
21+
P0DTC9 GO:0016567 protein ubiquitination
22+
P0DTC9 GO:0006457 protein folding
23+
P0DTC2 GO:0075509 endocytosis involved in viral entry into host cell
24+
P0DTC2 GO:0039654 fusion of virus membrane with host endosome membrane
25+
P0DTC2 GO:0009405 pathogenesis
26+
P0DTC2 GO:0046813 receptor-mediated virion attachment to host cell
27+
P0DTC2 GO:0019064 fusion of virus membrane with host plasma membrane
28+
P0DTC2 GO:0046718 viral entry into host cell
29+
P0DTC1 GO:0019079 viral genome replication
30+
P0DTC1 GO:0039648 modulation by virus of host protein ubiquitination
31+
P0DTC1 GO:0001172 transcription, RNA-templated
32+
P0DTC1 GO:0039548 suppression by virus of host IRF3 activity
33+
P0DTC1 GO:0039579 suppression by virus of host ISG15 activity
34+
P0DTC1 GO:0039520 induction by virus of host autophagy
35+
P0DTC1 GO:0039502 suppression by virus of host type I interferon-mediated signaling pathway
36+
P0DTC1 GO:0039595 induction by virus of catabolism of host mRNA
37+
P0DTC1 GO:0090305 nucleic acid phosphodiester bond hydrolysis
38+
P0DTC1 GO:0019082 viral protein processing
39+
P0DTC1 GO:0006508 proteolysis
40+
P0DTD1 GO:0039648 modulation by virus of host protein ubiquitination
41+
P0DTD1 GO:0032259 methylation
42+
P0DTD1 GO:0032508 DNA duplex unwinding
43+
P0DTD1 GO:0001172 transcription, RNA-templated
44+
P0DTD1 GO:0006351 transcription, DNA-templated
45+
P0DTD1 GO:0039644 suppression by virus of host NF-kappaB transcription factor activity
46+
P0DTD1 GO:0039579 suppression by virus of host ISG15 activity
47+
P0DTD1 GO:0039520 induction by virus of host autophagy
48+
P0DTD1 GO:0039502 suppression by virus of host type I interferon-mediated signaling pathway
49+
P0DTD1 GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
50+
P0DTD1 GO:0039595 induction by virus of catabolism of host mRNA
51+
P0DTD1 GO:0019083 viral transcription
52+
P0DTD1 GO:0039694 viral RNA genome replication
53+
P0DTD1 GO:0019082 viral protein processing
54+
P0DTD1 GO:0006508 proteolysis

‎SARS-CoV-2_predictions/predictions_seqvec_cco.txt

+69
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,69 @@
1+
A0A663DJA2 GO:0016021 integral component of membrane
2+
A0A663DJA2 GO:0016020 membrane
3+
P0DTD8 GO:0016021 integral component of membrane
4+
P0DTD8 GO:0033644 host cell membrane
5+
P0DTD8 GO:0016020 membrane
6+
P0DTC6 GO:0044165 host cell endoplasmic reticulum
7+
P0DTC6 GO:0044177 host cell Golgi apparatus
8+
P0DTC6 GO:0016020 membrane
9+
P0DTC6 GO:0044178 host cell Golgi membrane
10+
P0DTC6 GO:0044167 host cell endoplasmic reticulum membrane
11+
P0DTD3 GO:0005634 nucleus
12+
P0DTC4 GO:0044177 host cell Golgi apparatus
13+
P0DTC4 GO:0016021 integral component of membrane
14+
P0DTC4 GO:0044172 host cell endoplasmic reticulum-Golgi intermediate compartment
15+
P0DTC4 GO:0016020 membrane
16+
P0DTC4 GO:0044178 host cell Golgi membrane
17+
P0DTD2 GO:0030430 host cell cytoplasm
18+
P0DTD2 GO:0016020 membrane
19+
P0DTD2 GO:0044161 host cell cytoplasmic vesicle
20+
P0DTD2 GO:0044162 host cell cytoplasmic vesicle membrane
21+
P0DTC7 GO:0044165 host cell endoplasmic reticulum
22+
P0DTC7 GO:0044177 host cell Golgi apparatus
23+
P0DTC7 GO:0019012 virion
24+
P0DTC7 GO:0016021 integral component of membrane
25+
P0DTC7 GO:0044173 host cell endoplasmic reticulum-Golgi intermediate compartment membrane
26+
P0DTC7 GO:0016020 membrane
27+
P0DTC7 GO:0044178 host cell Golgi membrane
28+
P0DTC7 GO:0044167 host cell endoplasmic reticulum membrane
29+
P0DTC8 GO:0005615 extracellular space
30+
P0DTC8 GO:0005576 extracellular region
31+
P0DTC5 GO:0019031 viral envelope
32+
P0DTC5 GO:0044177 host cell Golgi apparatus
33+
P0DTC5 GO:0019012 virion
34+
P0DTC5 GO:0030430 host cell cytoplasm
35+
P0DTC5 GO:0016021 integral component of membrane
36+
P0DTC5 GO:0055036 virion membrane
37+
P0DTC5 GO:0044178 host cell Golgi membrane
38+
P0DTC3 GO:0044177 host cell Golgi apparatus
39+
P0DTC3 GO:0019012 virion
40+
P0DTC3 GO:0030430 host cell cytoplasm
41+
P0DTC3 GO:0005576 extracellular region
42+
P0DTC3 GO:0016021 integral component of membrane
43+
P0DTC3 GO:0044385 integral to membrane of host cell
44+
P0DTC3 GO:0016020 membrane
45+
P0DTC3 GO:0044178 host cell Golgi membrane
46+
P0DTC3 GO:0020002 host cell plasma membrane
47+
P0DTC9 GO:0019013 viral nucleocapsid
48+
P0DTC9 GO:0044177 host cell Golgi apparatus
49+
P0DTC9 GO:0019012 virion
50+
P0DTC9 GO:0030430 host cell cytoplasm
51+
P0DTC9 GO:0044220 host cell perinuclear region of cytoplasm
52+
P0DTC9 GO:0044172 host cell endoplasmic reticulum-Golgi intermediate compartment
53+
P0DTC2 GO:0019031 viral envelope
54+
P0DTC2 GO:0019012 virion
55+
P0DTC2 GO:0016021 integral component of membrane
56+
P0DTC2 GO:0055036 virion membrane
57+
P0DTC2 GO:0044173 host cell endoplasmic reticulum-Golgi intermediate compartment membrane
58+
P0DTC2 GO:0020002 host cell plasma membrane
59+
P0DTC1 GO:0030430 host cell cytoplasm
60+
P0DTC1 GO:0044220 host cell perinuclear region of cytoplasm
61+
P0DTC1 GO:0016021 integral component of membrane
62+
P0DTC1 GO:0033644 host cell membrane
63+
P0DTC1 GO:0016020 membrane
64+
P0DTD1 GO:0030430 host cell cytoplasm
65+
P0DTD1 GO:0044220 host cell perinuclear region of cytoplasm
66+
P0DTD1 GO:0016021 integral component of membrane
67+
P0DTD1 GO:0033644 host cell membrane
68+
P0DTD1 GO:0044172 host cell endoplasmic reticulum-Golgi intermediate compartment
69+
P0DTD1 GO:0016020 membrane

‎SARS-CoV-2_predictions/predictions_seqvec_mfo.txt

+38
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,38 @@
1+
A0A663DJA2 GO:0009055 electron transfer activity
2+
A0A663DJA2 GO:0005506 iron ion binding
3+
A0A663DJA2 GO:0020037 heme binding
4+
P0DTD8 GO:0015078 proton transmembrane transporter activity
5+
P0DTC6 GO:0005125 cytokine activity
6+
P0DTC6 GO:0005126 cytokine receptor binding
7+
P0DTD3 GO:0005515 protein binding
8+
P0DTC4 GO:0015078 proton transmembrane transporter activity
9+
P0DTD2 GO:0003735 structural constituent of ribosome
10+
P0DTD2 GO:0000049 tRNA binding
11+
P0DTC7 GO:0005515 protein binding
12+
P0DTC7 GO:0005537 mannose binding
13+
P0DTC8 GO:0005515 protein binding
14+
P0DTC5 GO:0039660 structural constituent of virion
15+
P0DTC3 GO:0005216 ion channel activity
16+
P0DTC9 GO:0003723 RNA binding
17+
P0DTC2 GO:0042802 identical protein binding
18+
P0DTC2 GO:0046789 host cell surface receptor binding
19+
P0DTC1 GO:0004519 endonuclease activity
20+
P0DTC1 GO:0003968 RNA-directed 5'-3' RNA polymerase activity
21+
P0DTC1 GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
22+
P0DTC1 GO:0008242 omega peptidase activity
23+
P0DTC1 GO:0004197 cysteine-type endopeptidase activity
24+
P0DTC1 GO:0003723 RNA binding
25+
P0DTC1 GO:0008270 zinc ion binding
26+
P0DTD1 GO:0004519 endonuclease activity
27+
P0DTD1 GO:0003724 RNA helicase activity
28+
P0DTD1 GO:0003968 RNA-directed 5'-3' RNA polymerase activity
29+
P0DTD1 GO:0008168 methyltransferase activity
30+
P0DTD1 GO:0000175 3'-5'-exoribonuclease activity
31+
P0DTD1 GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
32+
P0DTD1 GO:0008242 omega peptidase activity
33+
P0DTD1 GO:0004197 cysteine-type endopeptidase activity
34+
P0DTD1 GO:0005524 ATP binding
35+
P0DTD1 GO:0003723 RNA binding
36+
P0DTD1 GO:0003678 DNA helicase activity
37+
P0DTD1 GO:0008270 zinc ion binding
38+
P0DTD1 GO:0042802 identical protein binding

0 commit comments

Comments
 (0)