Add github action to knit Rmd

Author: stefpiatek

.github/workflows/knit-rmd.yaml

@@ -0,0 +1,47 @@
+name: Knit Rmd Files
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+  workflow_dispatch:
+
+jobs:
+  knit:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      pull-requests: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set up R
+        uses: r-lib/actions/setup-r@v2
+
+      - name: Install dependencies
+        run: |
+          Rscript -e 'install.packages(c("rmarkdown", "knitr"))'
+
+      - name: Find and knit Rmd files
+        run: |
+          Rscript -e '
+            rmd_files <- list.files(pattern = "\\.Rmd$", recursive = TRUE)
+            for (file in rmd_files) {
+              rmarkdown::render(file)
+            }
+          '
+
+      - name: Commit changes
+        run: |
+          git config --global user.name "github-actions[bot]"
+          git config --global user.email "github-actions[bot]@users.noreply.github.com"
+          git add -A
+          git commit -m "Knit Rmd files" || echo "No changes to commit"
+
+      - name: Push changes
+        uses: ad-m/[email protected]
+        with:
+          branch: ${{ github.head_ref }}