feat: added term for number of simulation steps per simulation output needed by BioNetGen

Author: jonrkarr

CHANGELOG.md

@@ -1,5 +1,8 @@
 # Changelog
 
+## 2.29 (OWL 2)
+- Added term for number of simulation steps per simulation output needed by BioNetGen
+
 ## 2.28 (OWL 2)
 - Improved performance of algorithm substitution in Python library
 

kisao.owl

@@ -19,7 +19,7 @@
         <rdfs:label xml:lang="en">Kinetic Simulation Algorithm Ontology (KiSAO)</rdfs:label>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://co.mbine.org/standards/kisao</rdfs:seeAlso>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/pubmed/22027554</rdfs:seeAlso>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">2.28</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">2.29</owl:versionInfo>
         <skos:definition xml:lang="en">The Kinetic Simulation Algorithm Ontology (KiSAO) classifies algorithms available for the simulation and analysis of models in biology, and their characteristics and the parameters required for their use.</skos:definition>
     </owl:Ontology>
 
@@ -14152,7 +14152,7 @@ This method only involves evaluations of f. This method is suitable for non-stif
         <dc:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-08-07</dc:created>
         <dc:creator xml:lang="en">JRK</dc:creator>
         <isImplementedIn rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/xpp</isImplementedIn>
-        <rdfs:label xml:lang="en">Maximum number of iterations for root finding</rdfs:label>
+        <rdfs:label xml:lang="en">maximum number of iterations for root finding</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000665"/>
@@ -14188,7 +14188,7 @@ This method only involves evaluations of f. This method is suitable for non-stif
         <dc:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-08-07</dc:created>
         <dc:creator xml:lang="en">JRK</dc:creator>
         <isImplementedIn rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/xpp</isImplementedIn>
-        <rdfs:label xml:lang="en">Memory size</rdfs:label>
+        <rdfs:label xml:lang="en">memory size</rdfs:label>
         <skos:definition xml:lang="en">Maximum number of points to store in memory, such as in the second order backward implicit product Euler scheme.</skos:definition>
     </owl:Class>
     <owl:Axiom>
@@ -14261,7 +14261,7 @@ This method only involves evaluations of f. This method is suitable for non-stif
         <dc:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-08-07</dc:created>
         <dc:creator xml:lang="en">JRK</dc:creator>
         <isImplementedIn rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/tellurium</isImplementedIn>
-        <rdfs:label xml:lang="en">Use multiple steps</rdfs:label>
+        <rdfs:label xml:lang="en">use multiple steps</rdfs:label>
         <skos:definition xml:lang="en">Whether to perform a multiple time step simulation.</skos:definition>
     </owl:Class>
     <owl:Axiom>
@@ -14521,6 +14521,25 @@ This method only involves evaluations of f. This method is suitable for non-stif
 
 
 
+    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000684 -->
+
+    <owl:Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000684">
+        <rdfs:subClassOf rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000244"/>
+        <dc:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-09-22</dc:created>
+        <dc:creator xml:lang="en">JRK</dc:creator>
+        <isImplementedIn rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/bionetgen</isImplementedIn>
+        <rdfs:label xml:lang="en">number of steps per output</rdfs:label>
+        <skos:definition xml:lang="en">Number of simulation steps between each simulation output.</skos:definition>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000684"/>
+        <owl:annotatedProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#isImplementedIn"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/bionetgen</owl:annotatedTarget>
+        <rdfs:comment xml:lang="en">BioNetgen</rdfs:comment>
+    </owl:Axiom>
+    
+
+
     <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000800 -->
 
     <owl:Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000800">

kisao_full.owl

@@ -19,7 +19,7 @@
         <rdfs:comment xml:lang="en">Kinetic Simulation Algorithm Ontology (full version, containing deprecated classes)</rdfs:comment>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://co.mbine.org/standards/kisao</rdfs:seeAlso>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/pubmed/22027554</rdfs:seeAlso>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">2.28</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">2.29</owl:versionInfo>
         <skos:definition xml:lang="en">The Kinetic Simulation Algorithm Ontology (KiSAO) classifies algorithms available for the simulation and analysis of models in biology, and their characteristics and the parameters required for their use.</skos:definition>
     </owl:Ontology>
 

libkisao/python/kisao/_version.py

@@ -1 +1 @@
-__version__ = '2.28'
+__version__ = '2.29'