Github Action: Lint Notebooks

Author: github-action

notebooks/ElasticBLAST/run_elastic_blast.ipynb

@@ -10,6 +10,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "af8ad165",
    "metadata": {},
    "source": [
     "## Overview\n",
@@ -18,6 +19,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "1855fc00",
    "metadata": {},
    "source": [
     "## Prerequisites\n",
@@ -26,6 +28,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "13e66dc9",
    "metadata": {},
    "source": [
     "## Learning Objectives\n",
@@ -35,13 +38,15 @@
   },
   {
    "cell_type": "markdown",
+   "id": "a3c61097",
    "metadata": {},
    "source": [
     "## Get Started"
    ]
   },
   {
    "cell_type": "markdown",
+   "id": "06e31b2a",
    "metadata": {},
    "source": [
     "### Install packages"
@@ -178,6 +183,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "d27edaa5",
    "metadata": {},
    "source": [
     "## Conclusions\n",
@@ -203,31 +209,7 @@
    ]
   }
  ],
- "metadata": {
-  "environment": {
-   "kernel": "python3",
-   "name": "common-cpu.m93",
-   "type": "gcloud",
-   "uri": "gcr.io/deeplearning-platform-release/base-cpu:m93"
-  },
-  "kernelspec": {
-   "display_name": "Python 3",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.7.12"
-  }
- },
+ "metadata": {},
  "nbformat": 4,
  "nbformat_minor": 5
 }

notebooks/GWAS/GWAS_coat_color.ipynb

@@ -53,9 +53,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "8ec900bd",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "! mkdir GWAS"
@@ -65,9 +63,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "3c20d2c1-1f0a-441d-9b5e-4ed018ec01ed",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "%%bash\n",
@@ -79,9 +75,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "4d43ae73",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "%%bash\n",
@@ -93,9 +87,7 @@
   {
    "cell_type": "markdown",
    "id": "37567b92-71f1-4c7d-8cce-c08e82b25557",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "### Install dependencies"
    ]
@@ -155,9 +147,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "e91c7a01",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "%%bash\n",
@@ -441,25 +431,7 @@
    "source": []
   }
  ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "conda_tensorflow2_p310",
-   "language": "python",
-   "name": "conda_tensorflow2_p310"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.10.12"
-  }
- },
+ "metadata": {},
  "nbformat": 4,
  "nbformat_minor": 5
 }

notebooks/GenAI/AWS_Bedrock_Intro.ipynb

@@ -10,6 +10,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "cdac7a41",
    "metadata": {},
    "source": [
     "## Overview"
@@ -55,6 +56,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "c1121bdb",
    "metadata": {},
    "source": [
     "## Learning Objectives\n",
@@ -64,6 +66,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "3b0eda8b",
    "metadata": {},
    "source": [
     "## Prerequisites\n",
@@ -91,9 +94,7 @@
   {
    "cell_type": "markdown",
    "id": "ff743f28-d9d9-4ffc-91c8-52f6bb7bd45c",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "![bedrock_overview](../../docs/images/bedrock_page.png)"
    ]
@@ -115,9 +116,7 @@
   {
    "cell_type": "markdown",
    "id": "6ccad801-ab6d-4044-b8a5-b8691dddcd19",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "![bedrock_models](../../docs/images/bedrock_model_access.png)"
    ]
@@ -200,9 +199,7 @@
   {
    "cell_type": "markdown",
    "id": "44aa23d6-02db-48c9-98a0-1cd344a45dcb",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "```\n",
     "What does this article say about treatment for inflamed joints?\n",
@@ -221,9 +218,7 @@
   {
    "cell_type": "markdown",
    "id": "e85f8b7a-91be-4351-9efd-d7beb4638aaa",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "![bedrock_chat_playground_3](../../docs/images/bedrock_chat_playground_3.png)"
    ]
@@ -270,9 +265,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "cbfffd09-7983-419b-a081-7f1cd7e98736",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "#download the metadata file\n",
@@ -328,9 +321,7 @@
   {
    "cell_type": "markdown",
    "id": "c0d2ee51-dbb4-4e75-8e6e-10230d873b20",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "![bedrock_knowledgebase_1](../../docs/images/bedrock_knowledgebase_1.png)"
    ]
@@ -412,19 +403,15 @@
   {
    "cell_type": "markdown",
    "id": "0ff48cf0-a8ec-4e8a-8e0c-a738c3b0eb8d",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "![bedrock_knowledgebase_6](../../docs/images/bedrock_knowledgebase_6.png)"
    ]
   },
   {
    "cell_type": "markdown",
    "id": "1b9e4e3c-fb8c-478e-83a1-5b406532523f",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "Next click **Select model** to connect a model to our Knowledge base, as of now you can only use the Claude model. Select which version of the Claude model you will want to use, for this tutorial we selected **Claude 2.1**, then select **Apply**."
    ]
@@ -607,6 +594,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "0ccf8b54",
    "metadata": {},
    "source": [
     "## Conclusions\n",
@@ -615,32 +603,15 @@
   },
   {
    "cell_type": "markdown",
+   "id": "91141aa0",
    "metadata": {},
    "source": [
     "## Clean Up\n",
     "If you deployed any models to endpoints you can delete those."
    ]
   }
  ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "conda_python3",
-   "language": "python",
-   "name": "conda_python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.10.13"
-  }
- },
+ "metadata": {},
  "nbformat": 4,
  "nbformat_minor": 5
 }