From 0666f4c1ff30906e7f30363af4970e720366c10c Mon Sep 17 00:00:00 2001 From: Jessica Britton Date: Mon, 6 Nov 2023 15:29:35 -0800 Subject: [PATCH 1/5] Import and index data into new proteomicssrm collection --- create-indexes.js | 6 ++++++ import-data.sh | 1 + 2 files changed, 7 insertions(+) diff --git a/create-indexes.js b/create-indexes.js index 71bf5fc..c843230 100644 --- a/create-indexes.js +++ b/create-indexes.js @@ -46,6 +46,12 @@ const collections = [ { ensembl_gene_id: 1 } ] }, + { + name: 'proteomicssrm', + indexes: [ + { ensembl_gene_id: 1 } + ] + }, { name: 'genesbiodomains', indexes: [ diff --git a/import-data.sh b/import-data.sh index 21b71c8..c30b310 100755 --- a/import-data.sh +++ b/import-data.sh @@ -61,6 +61,7 @@ mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabas mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection rnaboxdistribution --jsonArray --drop --file $DATA_DIR/rna_distribution_data.json mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection proteomicsboxdistribution --jsonArray --drop --file $DATA_DIR/proteomics_distribution_data.json mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection proteomicstmt --jsonArray --drop --file $DATA_DIR/proteomics_tmt.json +mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection proteomicssrm --jsonArray --drop --file $DATA_DIR/proteomics_srm.json mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection genesbiodomains --jsonArray --drop --file $DATA_DIR/genes_biodomains.json mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection biodomaininfo --jsonArray --drop --file $DATA_DIR/biodomain_info.json From eca6cd6de2996457874630add6a7ef61339de3c4 Mon Sep 17 00:00:00 2001 From: Jessica Britton Date: Wed, 8 Nov 2023 12:47:28 -0800 Subject: [PATCH 2/5] Bump data version to 62 to push ensembl_info & proteomics_srm to dev --- data-manifest.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data-manifest.json b/data-manifest.json index 1a589f0..05e3909 100644 --- a/data-manifest.json +++ b/data-manifest.json @@ -1,5 +1,5 @@ { - "data-version": "61", + "data-version": "62", "data-manifest-id": "syn13363290", "team-images-id": "syn12861877" } From 66a161cc6665e6f91940c38d8fe7b98c8aaa135f Mon Sep 17 00:00:00 2001 From: Jessica Britton Date: Mon, 18 Dec 2023 14:41:12 -0800 Subject: [PATCH 3/5] Data manifest v64 --- data-manifest.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data-manifest.json b/data-manifest.json index 05e3909..419b6d1 100644 --- a/data-manifest.json +++ b/data-manifest.json @@ -1,5 +1,5 @@ { - "data-version": "62", + "data-version": "64", "data-manifest-id": "syn13363290", "team-images-id": "syn12861877" } From dc02efa5bae21c54f8e614b49a2a2e2f09a6bbb2 Mon Sep 17 00:00:00 2001 From: Jessica Britton Date: Mon, 18 Dec 2023 17:44:33 -0800 Subject: [PATCH 4/5] Deploy ALD mv65 23 nominations with display fixes --- data-manifest.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data-manifest.json b/data-manifest.json index 419b6d1..a00d1ba 100644 --- a/data-manifest.json +++ b/data-manifest.json @@ -1,5 +1,5 @@ { - "data-version": "64", + "data-version": "65", "data-manifest-id": "syn13363290", "team-images-id": "syn12861877" } From 6ec2250756d12b1d32907d4ffb2badd9c940823e Mon Sep 17 00:00:00 2001 From: Jessica Britton Date: Tue, 19 Dec 2023 09:58:44 -0800 Subject: [PATCH 5/5] ALD mv66 - 23 nominations --- data-manifest.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data-manifest.json b/data-manifest.json index a00d1ba..0760186 100644 --- a/data-manifest.json +++ b/data-manifest.json @@ -1,5 +1,5 @@ { - "data-version": "65", + "data-version": "66", "data-manifest-id": "syn13363290", "team-images-id": "syn12861877" }