From 2bce0ed23d206ca52f65ff260bf9288d4c285dde Mon Sep 17 00:00:00 2001
From: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com>
Date: Fri, 8 Mar 2024 15:30:46 -0700
Subject: [PATCH] Update NF prod (#162)

* Update model_submit in NF-OSI dca_config.json

Signed-off-by: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com>

* Update version for data model and templates

---------

Signed-off-by: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com>
---
 NF-OSI/dca-template-config.json | 26 --------------------------
 NF-OSI/dca_config.json          |  8 +++++---
 2 files changed, 5 insertions(+), 29 deletions(-)
 delete mode 100644 NF-OSI/dca-template-config.json

diff --git a/NF-OSI/dca-template-config.json b/NF-OSI/dca-template-config.json
deleted file mode 100644
index 6f5ada1..0000000
--- a/NF-OSI/dca-template-config.json
+++ /dev/null
@@ -1,26 +0,0 @@
-{
-  "manifest_schemas": [
-      {"display_name": "Whole Genome Sequencing Assay", "schema_name": "WGSTemplate", "type": "file"},
-      {"display_name": "Whole Exome Sequencing Assay", "schema_name": "WESTemplate", "type": "file"},
-      {"display_name": "RNA Sequencing Assay", "schema_name": "RNASeqTemplate", "type": "file"},
-      {"display_name": "Single-cell RNA Sequencing Assay", "schema_name": "ScRNASeqTemplate", "type": "file"},
-      {"display_name": "Epigenetics Assay", "schema_name": "EpigeneticsAssayTemplate", "type": "file"},
-      {"display_name": "Other Genomics Assay", "schema_name": "GenomicsAssayTemplate", "type": "file"},
-      {"display_name": "Extended Genomics Assay", "schema_name": "GenomicsAssayTemplateExtended", "type": "file"},
-      {"display_name": "Imaging Assay", "schema_name": "ImagingAssayTemplate", "type": "file"},
-      {"display_name": "MRI Assay", "schema_name": "MRIAssayTemplate", "type": "file"},
-      {"display_name": "Pharmacokinetics Assay", "schema_name": "PharmacokineticsAssayTemplate", "type": "file"},
-      {"display_name": "Proteomics Assay", "schema_name": "ProteomicsAssayTemplate", "type": "file"},
-      {"display_name": "Plate-Based Reporter Assay", "schema_name": "PlateBasedReporterAssayTemplate", "type": "file"},
-      {"display_name": "Update Milestone Report", "schema_name": "UpdateMilestoneReport", "type": "file"},
-      {"display_name": "Clinical Assay Template", "schema_name": "ClinicalAssayTemplate", "type": "file"},
-      {"display_name": "Processed/Aligned Sequencing Reads", "schema_name": "ProcessedAlignedReadsTemplate", "type": "file"},
-      {"display_name": "Processed Variant Calls", "schema_name": "ProcessedVariantCallsTemplate", "type": "file"},
-      {"display_name": "Processed Expression Data", "schema_name": "ProcessedExpressionTemplate", "type": "file"},
-      {"display_name": "FACS Template", "schema_name": "FlowCytometryTemplate", "type": "file"},
-      {"display_name": "Light Scattering Assay", "schema_name": "LightScatteringAssayTemplate", "type": "file"},
-      {"display_name": "Protocol Resource", "schema_name": "ProtocolTemplate", "type": "file"}
-    ],
-  "service_version": "23.9.3",
-  "schema_version": ""
-}
diff --git a/NF-OSI/dca_config.json b/NF-OSI/dca_config.json
index 6045b95..b8cbc9b 100644
--- a/NF-OSI/dca_config.json
+++ b/NF-OSI/dca_config.json
@@ -2,9 +2,9 @@
   "dcc": {
     "name": "NF-OSI",
     "synapse_asset_view": "syn16858331",
-    "data_model_url": "https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/v8.2.1/NF.jsonld",
+    "data_model_url": "https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/v9.1.0/NF.jsonld",
     "data_model_info": "",
-    "template_menu_config_file": "https://raw.githubusercontent.com/Sage-Bionetworks/data_curator_config/prod/NF-OSI/dca-template-config.json",
+    "template_menu_config_file": "https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/v9.1.0/dca-template-config.json",
     "logo_location": "",
     "logo_link": "",
     "dcc_help_link": "",
@@ -28,7 +28,9 @@
       "use_schema_labels": true,
       "table_manipulation": "replace",
       "manifest_record_type": "table_and_file",
-      "hide_blanks": true
+      "hide_blanks": true,
+      "table_column_names":"display_label",
+      "annotation_keys": "display_label"
     }
   }
 }