From 8650e5ee9acc6cf9d581915d164f760478fc6b01 Mon Sep 17 00:00:00 2001 From: Dan Lu Date: Sun, 9 Apr 2023 16:31:37 -0700 Subject: [PATCH] feat: add custom_release_rules to the github actions --- .github/workflows/R-CMD-check.yaml | 4 ++-- .github/workflows/Release_Docker_build.yml | 1 + .github/workflows/pkgdown.yaml | 2 +- inst/config.yml | 2 +- inst/using-the-dccvalidator-1kD.Rmd | 4 ++-- 5 files changed, 7 insertions(+), 6 deletions(-) diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index f174ff5..7cb5b9a 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -35,7 +35,7 @@ jobs: SYNAPSE_AUTH_TOKEN: ${{ secrets.SYNAPSE_PAT }} steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - uses: r-lib/actions/setup-r@v2 with: @@ -62,7 +62,7 @@ jobs: run: | export DEBIAN_FRONTEND=noninteractive sudo apt-get -y update - sudo apt-get install -y make python-minimal pandoc pandoc-citeproc git-core libv8-dev libxml2-dev libcurl4-openssl-dev libssl-dev libssh2-1-dev zlib1g-dev libgit2-dev + sudo apt-get install -y make python-is-python3 pandoc pandoc-citeproc git-core libv8-dev libxml2-dev libcurl4-openssl-dev libssl-dev libssh2-1-dev zlib1g-dev libgit2-dev - name: Install system dependencies (macOS) if: runner.os == 'macOS' && matrix.config.r == 'devel' diff --git a/.github/workflows/Release_Docker_build.yml b/.github/workflows/Release_Docker_build.yml index 44628df..a42574d 100644 --- a/.github/workflows/Release_Docker_build.yml +++ b/.github/workflows/Release_Docker_build.yml @@ -27,6 +27,7 @@ jobs: uses: mathieudutour/github-tag-action@v6.1 with: github_token: ${{ secrets.GITHUB_TOKEN }} + custom_release_rules: fix:patch:Bug Fixes,chore:patch:Chores,feat:minor:Features,perf:Major:Performance - name: Create a GitHub release uses: ncipollo/release-action@v1 with: diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 73b5b88..cec1542 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -13,7 +13,7 @@ jobs: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - uses: r-lib/actions/setup-r@v2 diff --git a/inst/config.yml b/inst/config.yml index 4901217..e91cb16 100644 --- a/inst/config.yml +++ b/inst/config.yml @@ -304,7 +304,7 @@ veoibd: - "3466183" # 1kD_DyadicSociometrics_Cambridge - "3436714" # 1kD_First1000Daysdatabase - "3458847" # 1kD_M4EFaD_BMT team - - "3464137" # 1kD_Stanford_Yeung team + - "3464137" # 1kD_Computer Vision Analysis of PCI - "3460645" # 1kD_M4EFaD_Auckland include_biospecimen_type: FALSE templates: diff --git a/inst/using-the-dccvalidator-1kD.Rmd b/inst/using-the-dccvalidator-1kD.Rmd index 6c96027..3cf70c0 100644 --- a/inst/using-the-dccvalidator-1kD.Rmd +++ b/inst/using-the-dccvalidator-1kD.Rmd @@ -24,8 +24,8 @@ To use this application you must: 1. Be logged in to Synapse in your browser 2. Be a [Synapse certified user](https://docs.synapse.org/articles/accounts_certified_users_and_profile_validation.html){target="_blank"} -3. Be a member of either of the teams: [1kD_Assembloids](https://www.synapse.org/#!Team:3436716), [1kD_BRAINRISE](https://www.synapse.org/#!Team:3436720), [1kD_Connectome](https://www.synapse.org/#!Team:3436722), [1kD_DyadicSociometrics](https://www.synapse.org/#!Team:3436713), [1kD_First1000Daysdatabase](https://www.synapse.org/#!Team:3436714), [1kD_InfantNaturalStatistics](https://www.synapse.org/#!Team:3436721), [ -1kD_KHULA](https://www.synapse.org/#!Team:3436718), [1kD_M4EFaD_LABS](https://www.synapse.org/#!Team:3436717), [1kD_M4EFaD_BMT](https://www.synapse.org/#!Team:3458847),[1kD_MicrobiomeBrainDevelopment](https://www.synapse.org/#!Team:3436509),[1kD_M4EFaD_Auckland](https://www.synapse.org/#!Team:3460645){target="_blank"} +3. Be a member of either of the teams: [1kD_Assembloids](https://www.synapse.org/#!Team:3436716), [1kD_BRAINRISE](https://www.synapse.org/#!Team:3436720), [1kD_Connectome](https://www.synapse.org/#!Team:3436722), [1kD_DyadicSociometrics_NTU](https://www.synapse.org/#!Team:3436713), [1kD_DyadicSociometrics_Cambridge](https://www.synapse.org/#!Team:3466183),[1kD_First1000Daysdatabase](https://www.synapse.org/#!Team:3436714), [1kD_InfantNaturalStatistics](https://www.synapse.org/#!Team:3436721), [ +1kD_KHULA](https://www.synapse.org/#!Team:3436718), [1kD_M4EFaD_LABS](https://www.synapse.org/#!Team:3436717), [1kD_M4EFaD_BMT](https://www.synapse.org/#!Team:3458847),[1kD_MicrobiomeBrainDevelopment](https://www.synapse.org/#!Team:3436509),[1kD_M4EFaD_Auckland](https://www.synapse.org/#!Team:3460645), [1kD_Computer Vision Analysis of PCI](https://www.synapse.org/#!Team:3464137){target="_blank"} Some portions of the app submit data to Synapse. This allows curators at Sage to troubleshoot issues if needed. No one outside the [1kD admins](https://www.synapse.org/#!Team:3433360) will be able to download the data.