README.md

App Training "Genomique Comparative Bacterienne": Biosphere BASE environment for "Genomique Comparative Bacterienne" using Jupyter

For deploying Biosphere VM for training Genomique Comparative Bacterienne

Description

This IFB cloud appliance provides both the Jupyter Notebook and Lab environment to work on Bacterial Comparative Genomics.

This Jupyter app is based on the Jupyter Docker Stacks. By default, this Biosphere app uses the stack jupyter/datascience-notebook but users can choose any other existing stack with an Advanced deployment in Biosphere portal. In addition, we integrated various tools to perform Bacterial Comparative Genomics

Tools

• Bash kernel for jupyter
• Pandas
• Matplotlib
• Jupyter notebook/lab
• prokka
• Minimap2
• Circos
• MOB-Suite
• Roary
• Scoary
• FastANI
• Singularity

Contact

• Support Cloud IFB

Developpers

• Alexis Dereeper SouthGreen Platform
• Nicolas Fernandez SouthGreen Platform

App data

• Version : 20.04
• OS : Ubuntu
• OS version : 20.04