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Use peak_sign in quality metrics.prepare_data to find template extremum (#4403)
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src/spikeinterface/metrics/quality/quality_metrics.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -78,7 +78,7 @@ def _set_params(
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use_valid_periods=False,
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periods=None,
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# common extension kwargs
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peak_sign=None,
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peak_sign="neg",
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seed=None,
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skip_pc_metrics=False,
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):
@@ -135,7 +135,7 @@ def _prepare_data(self, sorting_analyzer, unit_ids=None):
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all_labels = sorting_analyzer.sorting.unit_ids[spike_unit_indices]
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# Get extremum channels for neighbor selection in sparse mode
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extremum_channels = get_template_extremum_channel(sorting_analyzer)
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extremum_channels = get_template_extremum_channel(sorting_analyzer, peak_sign=self.params["peak_sign"])
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# Pre-compute spike counts and firing rates if advanced NN metrics are requested
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advanced_nn_metrics = ["nn_advanced"] # Our grouped advanced NN metric

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