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---
layout: slides
title: "What is Bioinformatics?"
---
### Discuss: Where can you find Bioinformatics?
---
### Where can you find Bioinformatics?
Chemistry, Biology, Physics: Creating Software for Devices
<img src="/images/materials/introduction/evolution_seq_technologies.svg" width="400">
<img src="/images/materials/bioinformatics/Blood_Glucose_Testing.jpeg" width="200">
---
### Where can you find Bioinformatics?
Chemistry, Biology, Physics: Analysis of Sequence Data
---
### Where can you find Bioinformatics?
Chemistry, Biology, Physics: Analysis of Image Data
<img src="/images/materials/bioinformatics/cell_image.jpg" width="400">
---
### Where can you find Bioinformatics?
Mathematics, Statistics: Computer Science, Algorithms
<img src="/images/materials/bioinformatics/AI.png" width="400">
---
### Bioinformatics is the Bridge
---
### Discuss: What kind of data will we encounter?
---
### Types of Data We Will Have
- **Raw Signal** (e.g., current/time-data of MinION)
- **Sequence Data** (e.g., FASTQ data)
- **Interpreted Data** (i.e., results of Kraken)
---
### Raw Signal Data
---
### Sequence Data: FASTQ Format
```
@SEQ_ID
GATTTGGGGTTCAAAGCAGTATCGATCAAATAGTAAATCCATTTGTTCAACTCACAGTTT
+
!''*((((***+))%%%++)(%%%%).1***-+*''))**55CCF>>>>>>CCCCCCC65
```
- **Line 1:** Read ID
- **Line 2:** Sequence
- **Line 3:** Additional Information
- **Line 4:** Quality String
---
### Interpreted Data: Kraken
---
### Interpreted Data: Kraken
<img src="/images/protocols/beer-data-analysis/krona.png" width="400">
---
### Interpreted Data: Kraken
|Taxon | Read number |
|-------|-------------|
| d__Eukaryota | 2053 |
| d__Eukaryota,k__Fungi | 2053 |
|d__Eukaryota,k__Fungi,p__Ascomycota | 2049 |